Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq8547 114 2e-20 seq4887 91.5 2e-13 >seq8547 Length=3126 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| ||| ||||||| |||||||| ||||| || | |||||||| |||||| Sbjct 272 GCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGTCAGTCCA 213 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| || | ||||||||||||||| || ||| |||||||||||| ||||| || Sbjct 212 GGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATA 153 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || ||| ||||| | ||||| ||| |||| Sbjct 152 CCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAA 115 >seq4887 Length=4728 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 11668 CGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT 11727 || || || || | ||| ||||||||||| || || | || || ||| || ||| Sbjct 4262 CGTTTTTTCCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGATTTCTTTCGT 4321 Query 11728 GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAG 11787 ||| |||||| | || | ||||| | |||||||| || |||||||||| ||| Sbjct 4322 GCCATTTCGAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGGAAT 4381 Query 11788 TTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAG 11846 | || | ||| |||| || ||||| || ||||| | ||| || || | ||| || || Sbjct 4382 TCTGAGCCAGAAACAGTG-ATGAAAGGTACATTCGCCTCTCCTGCAGTTGCTTTGGCAAG 4440 Query 11847 GAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 | |||||| || || || |||| ||||| |||||| || || Sbjct 4441 CAAAGTCTTGCCAGTTCCTGGTGGACCAGTGAGAAGAGCACC 4482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588543868308800