Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq42683 107 4e-18 seq4398 105 1e-17 seq43004 104 5e-17 seq49882 102 2e-16 seq3111 102 2e-16 seq5570 100 6e-16 seq50049 93.3 9e-14 >seq42683 Length=382 Score = 107 bits (118), Expect = 4e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || |||||||| ||||| || ||||||||||||||||| |||||||| ||| Sbjct 297 AGACGCTGCTGGTCTGGCGGAATCCCCTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCA 238 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 || || ||||| || |||||||| || | ||||| |||||||| || || ||||| Sbjct 237 ATCGTATCCGATGCCTCAACTTCAAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAAA 178 Query 195133 ACTTGCATT 195141 | ||||||| Sbjct 177 ATTTGCATT 169 >seq4398 Length=5060 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 195015 TCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAAT 195074 ||| || || || |||||||||||||| ||||||||||||||| ||| ||||| || || Sbjct 4740 TCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACGTTTTCGAT 4681 Query 195075 GGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACAC 195134 ||| || ||| || |||||||| || | ||| ||||| || | ||| |||||||| | Sbjct 4680 GGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAAGAT 4621 Query 195135 TTGCAT 195140 ||||| Sbjct 4620 CTGCAT 4615 >seq43004 Length=377 Score = 104 bits (114), Expect = 5e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 195012 AAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTC 195071 ||| || || |||||||| ||||| || ||||||||||||||||| ||||||||| || Sbjct 298 AAGACGCTGCTGGTCTGGCGGAATCCCCTCTTTGTCTTGAATTTTAGCCTTGACGTTTTC 239 Query 195072 AATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 ||| || ||||| || || || || || | ||||| |||||||| || || ||||| Sbjct 238 AATCGTATCCGATGCCTCAACCTCGAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAA 179 Query 195132 CACTTGCATT 195141 | ||||||| Sbjct 178 AATTTGCATT 169 >seq49882 Length=286 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 195015 TCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAAT 195074 |||||| || || |||||||| ||||||||||| ||||| || ||||||||||||||| Sbjct 189 TCGTTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCAAT 130 Query 195075 GGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACAC 195134 ||| || || ||||||||| ||||| | |||||||| || | || || || || | Sbjct 129 GGTATCAGACGCTTCCACTTCTAGGGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGAT 70 Query 195135 TTGCAT 195140 ||||| Sbjct 69 CTGCAT 64 >seq3111 Length=6167 Score = 102 bits (112), Expect = 2e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || || ||||| ||||||||||| ||||| |||||||| |||||| || || Sbjct 6039 AGACGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCTGAATTTTGGCCTTGACATTTTCT 6098 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 || ||||| || || ||||| ||||| | ||||| || ||||||||||| ||||| Sbjct 6099 ATAGTGTCAGATGCCTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 6158 Query 195133 ACTTGCATT 195141 | ||||||| Sbjct 6159 ATTTGCATT 6167 >seq5570 Length=4331 Score = 100 bits (110), Expect = 6e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 195016 CGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATG 195075 || || ||||| || || || ||||| |||||||||||||| ||| || || ||||| Sbjct 4276 CGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATT 4217 Query 195076 GTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135 ||||| || ||| |||||||| || | |||||||| ||||| ||||||||||| | Sbjct 4216 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTTTTTACGAAGATC 4157 Query 195136 TGCAT 195140 ||||| Sbjct 4156 TGCAT 4152 >seq50049 Length=284 Score = 93.3 bits (102), Expect = 9e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 195007 AAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACG 195066 |||| | |||||| || || ||||| || ||||||||||| ||||| || ||||||| Sbjct 88 AAGACCAATCGTTGCTGATCAGGAGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTGACG 147 Query 195067 TTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTT 195126 || |||||||| || ||| ||||||||| || || | |||||||| || | || || Sbjct 148 TTTTCAATGGTATCAGAAGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTC 207 Query 195127 ACGAACACTTGCAT 195140 || || | ||||| Sbjct 208 ACAAAGATCTGCAT 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108647222683832