Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq8547 105 8e-18 seq57627 91.5 2e-13 seq12694 84.2 2e-11 >seq8547 Length=3126 Score = 105 bits (116), Expect = 8e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| |||||||| | ||| ||||| || |||| | || ||||||||| ||| | Sbjct 276 ACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGTCAG 217 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 |||||||| || | ||| |||| ||| || || | |||||| |||||| ||||| Sbjct 216 TCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAA 157 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 |||||| || || || |||||||||| || | ||| ||| | ||| || ||| || Sbjct 156 TATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACTAGC 97 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTT 19172 | |||| || ||||||||||| || || || Sbjct 96 AGTCCAACGAAGAGCCCAATCAGCTTTTTTCTT 64 >seq57627 Length=208 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||||| ||| | ||| || ||| ||||||||||||||||||||||| ||||| Sbjct 171 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 112 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 || |||||||| |||||||| | || |||| ||| || ||||| Sbjct 111 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTC 67 >seq12694 Length=2124 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 48919 TAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAG 48978 |||| | ||||| |||||||| || ||||| || | || ||||| ||||| | | || Sbjct 703 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 644 Query 48979 CATAATCTGGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTAATT 49038 |||||||||| |||| ||| ||| || | || | ||| || || || |||| |||| Sbjct 643 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 584 Query 49039 CTTTAGTAGTTACACCTGTATATATTCCT 49067 | ||| ||||| || ||||| || ||| Sbjct 583 CAACAGTTGTTACTCCAGTATAAATGCCT 555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561696380773440