Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq51208 152 4e-31 seq10346 125 6e-23 seq32922 118 9e-21 seq35495 114 1e-19 seq36270 111 1e-18 seq35471 109 4e-18 seq14119 109 4e-18 seq13757 104 2e-16 seq53960 91.5 1e-12 seq18389 87.8 1e-11 >seq51208 Length=271 Score = 152 bits (168), Expect = 4e-31 Identities = 144/184 (78%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 550353 AAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTG 550412 ||| ||| ||||||||| |||| | |||| || |||| ||||| || | |||| Sbjct 2 AAAGGAAGCAAACAGCCGAAGCTTATCTTGGCCATCCAGTTCGAGATGCTGTCGTTACTG 61 Query 550413 TACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTG 550472 | ||||| |||||||||||| ||| |||||||| |||||||| ||||| | ||||||| Sbjct 62 TTCCAGCCTATTTTAATGACGGACAGCGTCAAGCAACTAAAGACGCTGGTCAGATTGCTG 121 Query 550473 GACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 |||||||||| | || ||||| |||||||| || |||||||| || || |||||| | | Sbjct 122 GACTTAATGTATTGCGAATTATAAATGAACCAACAGCTGCTGCTCTGGCTTATGGATTGG 181 Query 550533 ATAA 550536 |||| Sbjct 182 ATAA 185 >seq10346 Length=2631 Score = 125 bits (138), Expect = 6e-23 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 550385 CAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAA 550444 || ||||||||| |||| || | ||||| || | || ||||| || | ||||||||| Sbjct 1002 CATGAAGTTACGCATGCTGTGGTTACTGTCCCGACTTACTTTAACGATGCTCAACGTCAA 1061 Query 550445 GCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCT 550504 ||||| |||||||||||| || |||||||||||||| | |||||||| |||||||| Sbjct 1062 GCTACCAAAGATGCTGGAACCATCTCTGGACTTAATGTTGTACGTATTATTAATGAACCG 1121 Query 550505 ACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || ||||| ||| | || |||||| | || || Sbjct 1122 ACAGCTGCGGCAATAGCTTATGGATTGGACAA 1153 >seq32922 Length=598 Score = 118 bits (130), Expect = 9e-21 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || ||||| || || || || || || || |||||||||||||||||||||| Sbjct 405 ATGCAGTCATCACTGTCCCTGCCTACTTCAACGATTCTCAACGTCAAGCTACTAAAGATG 464 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| | |||||||||||| ||| | ||| | |||||||||| || ||||||||| Sbjct 465 CTGGTCAGATTGCTGGACTTCGAGTTTTGCGTGTAGTCAATGAACCCACAGCTGCTGCAT 524 Query 550518 TTGCATATGG 550527 | || ||||| Sbjct 525 TAGCTTATGG 534 >seq35495 Length=529 Score = 114 bits (126), Expect = 1e-19 Identities = 178/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 552231 TATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAA-AACTACAAAA 552289 ||||| || || | |||||||||||| | ||||| ||||| | ||||| | | Sbjct 2 TATGGGGCTGCTGTACAAGCAGCTATTTTGTCTGGGGTTCGGGATGAGACAACTA-AGGA 60 Query 552290 TATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTAT 552349 | || | || || ||||||||||| || ||| | ||| ||||||| | ||| || | || Sbjct 61 TGTTCTTCTAGTTGATGTTACTCCACTTTCTTTGGGTATAGAAACGGCTGGGGGAGTGAT 120 Query 552350 GACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTAC 552409 ||| || ||| | || | || |||| ||||| |||| || | |||| |||| Sbjct 121 GACCAAACTTGTTGAACGCAACGCTACAATTCCCCACAAAACTTCCCAAACATTTACTAC 180 Query 552410 GTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCAC 552469 ||||| |||||||| | |||||||| |||||| ||| ||| ||||| ||| || || Sbjct 181 TTATTCGGATAATCAGCCGGCTGTTACTATTCAAGTTTATGAGGGAGAGAGAGCTTTGAC 240 Query 552470 TAAAGATAATAA 552481 ||| | ||||| Sbjct 241 TAAGGTGAATAA 252 >seq36270 Length=510 Score = 111 bits (122), Expect = 1e-18 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 550329 AAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAG 550388 || |||| | ||||| || | ||||| || |||| || || ||| | || ||| Sbjct 312 AAGTTTCGGCAATGGTCTTGACTAAAATAAAGGAAACGGCTGAGGCATTTTTGGGCCAAA 371 Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| |||||| || || || | || || || ||||| ||| ||||| ||||| | Sbjct 372 CCGTTAAGGATGCTGTCATCACCATGCCGGCCTACTTTAACGACAGTCAACGCCAAGCCA 431 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | || ||||||||| ||| ||| |||||||||| | ||||| ||||| || ||||||| Sbjct 432 CAAAGGATGCTGGAACGATTTCTGAACTTAATGTTTTGCGTATCATCAACGAGCCTACTG 491 Query 550509 CTGCTGCACTTGCATATGG 550527 |||| || |||| ||||| Sbjct 492 CTGCGGCTATTGCTTATGG 510 >seq35471 Length=529 Score = 109 bits (120), Expect = 4e-18 Identities = 177/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 552231 TATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAA-- 552288 ||||| || || | |||||||||||| | ||||| ||||| | | ||||| Sbjct 2 TATGGGGCTGCTGTACAAGCAGCTATTTTGTCTGGGGTTCGGGATGAGACA--ACAAAGG 59 Query 552289 ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTA 552348 || || | || || || |||||||| || ||| | || ||||||| | ||| || ||| Sbjct 60 ATGTTCTTCTCGTTGACGTTACTCCACTTTCTTTGGGAATAGAAACGGCTGGGGGAGTTA 119 Query 552349 TGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTA 552408 |||| || ||| | || | || |||| ||||| |||| || | ||| ||| Sbjct 120 TGACCAAACTTGTTGAACGCAACGCTACAATTCCCCACAAAACTTCCCAAACCTTTACTA 179 Query 552409 CGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCA 552468 | ||||| |||||||| | |||||||| |||||| ||| |||||||||||| || | Sbjct 180 CTTATTCGGATAATCAGCCGGCTGTTACTATTCAAGTTTATGAAGGAGAAAGGGCTTTGA 239 Query 552469 CTAAAGATAATAA 552481 |||| | ||||| Sbjct 240 CTAAGGTGAATAA 252 >seq14119 Length=1895 Score = 109 bits (120), Expect = 4e-18 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 428248 AAGTTGTGTAAAGATATATCTTGCGCTTGCGGAATCTTTACCTCCTGACATTCTAGTTCC 428307 |||||| || || ||||| | | ||| |||||| |||||| | || ||| || Sbjct 1730 AAGTTGAGTGAAAATATAACGAGGTGAAGCGTTATCTTTTCCTCCTTGTAATCGAGTACC 1789 Query 428308 AAATTGTCCATTAGGCATCAATAAATTAATATTATTACTTCCCACATAATTTTGGGCCAT 428367 |||||| ||| ||||||| |||| ||| || |||||| || ||||||||||| |||| Sbjct 1790 AAATTGACCAATAGGCATTAATAGATTGATGTTATTAGAGCCAACATAATTTTGAGCCAA 1849 Query 428368 ATTAACAATGGTACTAGTTAAGGATTGTTCACCATGATGATAT 428410 ||| ||||| || |||| |||||||| |||||||||||| Sbjct 1850 ATTCACAATTGTTGACATTAATGATTGTTCTCCATGATGATAT 1892 >seq13757 Length=1946 Score = 104 bits (114), Expect = 2e-16 Identities = 137/189 (72%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 393971 TTTACTAATTGTGTTAAATATTCAATGTTATGTTTTGTCACAATTTCATCAAATGTTAAA 394030 || ||||||| | ||| | |||||| ||| | |||||||||||| |||||||||| Sbjct 1544 TTGACTAATTTTTTTAC-TGTTCAATATTAAATGGCGTCACAATTTCAGGAAATGTTAAA 1486 Query 394031 TTCATTGCAATAATTTGTGGTAGTCCCACTTCATTAAGAGCAATATTTGGATCCGAGGTA 394090 ||| || ||| || || | || || || || || | ||||||||| | ||| Sbjct 1485 TTCTGAGCGATACTTCTCGGCACACCAACAGTATCAATAGGCAAATTTGGATCAGGCGTA 1426 Query 394091 ATAACTGTACGACCTGACATATCCACACGTTTTCCCATAAGATTTCCACGAATTCTACCT 394150 || ||||| || | || | ||| || || || |||||||||||||| ||||| | |||| Sbjct 1425 ATGACTGTTCGCGCAGAGAAATCAACTCGCTTGCCCATAAGATTTCCCCGAATACGACCT 1366 Query 394151 TCTTTACCT 394159 ||||| ||| Sbjct 1365 TCTTTGCCT 1357 >seq53960 Length=243 Score = 91.5 bits (100), Expect = 1e-12 Identities = 100/129 (78%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG-ACGTAT 550467 ||||| || || || || |||||| ||||| ||||| || || |||||||| ||| || Sbjct 242 ACTGTGCCTGCGTACTTCAATGACAGTCAACGCCAAGCCACAAAGGATGCTGGGACG-AT 184 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 | |||||||||||||| | ||||| ||||| || || |||||||| || ||| ||||| Sbjct 183 TTCTGGACTTAATGTTTTGCGTATCATCAACGAGCCAACTGCTGC-GCCATTGACTATGG 125 Query 550528 ACTTGATAA 550536 | ||||| Sbjct 124 TTTGGATAA 116 >seq18389 Length=1378 Score = 87.8 bits (96), Expect = 1e-11 Identities = 162/236 (69%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 552214 CAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTG 552273 |||||||||||||||| |||||||| || | ||||| | | |||||||| || Sbjct 1151 CAGATGAGGCTGTTGCTTATGGTGCTGCTGTCCAAGCTGGAGTAATTTCTGGAGAA---- 1206 Query 552274 ATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAA 552333 ||| | ||| || ||||| | |||| || | || | |||| ||| | |||| Sbjct 1207 --GAAGA--TACTGAA-ATTGTTTTGTTAGACGTCAACCCATTGACTCTCGGTATTGAAA 1261 Query 552334 CAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAAT 552393 | ||||| ||| | ||||| || | ||| || |||| ||| || ||| |||||| Sbjct 1262 CTGTTGGTGGTGTGATGACAAAGTTGATCAATCGAAACACTGTCATCCCTACCAAAAAAG 1321 Query 552394 CTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTT 552449 | | || || ||||| |||||||||| | ||||||||||||| ||||| Sbjct 1322 CACAAGTCTTCTCTACAGCAGCAGATAATCAGCCGACTGTTACAATTCAGGTTTTT 1377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026191890801040