Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq9496 107 2e-18 seq5570 107 2e-18 seq4398 107 2e-18 seq3537 107 2e-18 seq3111 98.7 8e-16 seq42683 84.2 2e-11 >seq9496 Length=2859 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||||||||||||||| ||||||||||| || ||||||||||| || || ||| |||| Sbjct 1508 CAAACGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTC 1449 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | ||||| || | || |||||||| || | || || ||||| ||||| || ||||| Sbjct 1448 AATCGTGTCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTCAAAGTCTTGACAAA 1389 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 1388 AATCTGCAT 1380 >seq5570 Length=4331 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||||||||| || || ||||| || ||||| || ||||||||||| || ||| |||| Sbjct 4280 CAAACGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTC 4221 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | |||||||| | ||| ||||||||||||| || || || || || |||||||| || Sbjct 4220 AATTGTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTTTTTACGAA 4161 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 4160 GATCTGCAT 4152 >seq4398 Length=5060 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||| ||||| ||||| || ||||||||||| || |||||||||||| || || |||| Sbjct 4743 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACGTTTTC 4684 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | || ||||| | || ||||||||||||| |||||| || || | ||| ||||| || Sbjct 4683 GATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAA 4624 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 4623 GATCTGCAT 4615 >seq3537 Length=5734 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||||||||||||||| ||||| || || |||||||||||||||||| || ||| | || Sbjct 3253 CAAACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTC 3312 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | || ||||| | || || || ||||| | ||||| ||||| | ||| |||||||| Sbjct 3313 AATGGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAA 3372 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 3373 AATCTGCAT 3381 >seq3111 Length=6167 Score = 98.7 bits (108), Expect = 8e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 || |||||| ||||| || ||||||||||| || || |||||||| || ||| |||| Sbjct 6038 CAGACGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCTGAATTTTGGCCTTGACATTTTC 6097 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 || ||||||||| | || ||||| || |||| || || || || |||||||| || || Sbjct 6098 TATAGTGTCAGATGCCTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAA 6157 Query 101461 TATCTGCAT 101469 || ||||| Sbjct 6158 GATTTGCAT 6166 >seq42683 Length=382 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 || |||||| || || |||||||| || ||||| ||||||||||| ||| || |||| Sbjct 298 CAGACGCTGCTGGTCTGGCGGAATCCCCTCTTTGTCTTGAATTTTGGCTTTGACGTTTTC 239 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | || || || | || ||||||||||||| || ||||| || || || || || || Sbjct 238 AATCGTATCCGATGCCTCAACTTCAAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAA 179 Query 101461 TATCTGCAT 101469 || ||||| Sbjct 178 AATTTGCAT 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395994919274472