Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq51208 138 7e-27 seq10346 132 3e-25 seq35471 118 7e-21 seq2010 118 7e-21 seq35495 113 3e-19 seq14119 113 3e-19 seq17749 109 4e-18 seq13757 109 4e-18 seq40541 107 1e-17 seq32922 107 1e-17 seq14452 95.1 8e-14 seq13607 95.1 8e-14 seq48301 91.5 1e-12 seq5514 89.7 3e-12 seq36270 87.8 1e-11 seq11241 87.8 1e-11 seq43004 86.0 4e-11 >seq51208 Length=271 Score = 138 bits (152), Expect = 7e-27 Identities = 145/189 (77%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 474690 AAATGAAACAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTAC 474747 ||| ||| ||||| || |||| |||||||| || ||| ||||| || |||| Sbjct 2 AAAGGAAGCAAACAGCCGAAGCT--TATCTTGGCCATCCAGTTCGAGATGCTGTCGTTAC 59 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 ||||||||| ||||||||||| || ||||||||||||||||| || || ||||| Sbjct 60 TGTTCCAGCCTATTTTAATGACGGACAGCGTCAAGCAACTAAAGACGCTGGTCAGATTGC 119 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 || |||||||| || || ||||| |||||||||||||| || || || |||||||| | Sbjct 120 TGGACTTAATGTATTGCGAATTATAAATGAACCAACAGCTGCTGCTCTGGCTTATGGATT 179 Query 474868 TGATAAGAA 474876 |||||||| Sbjct 180 GGATAAGAA 188 >seq10346 Length=2631 Score = 132 bits (146), Expect = 3e-25 Identities = 123/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 474721 ACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCA 474780 ||| ||||| || |||| || ||||||| || | || ||||| ||| |||||||||| Sbjct 1001 ACATGAAGTTACGCATGCTGTGGTTACTGTCCCGACTTACTTTAACGATGCTCAACGTCA 1060 Query 474781 AGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840 ||| || |||||||| |||| || | || ||||||||| ||||||||||||||||||| Sbjct 1061 AGCTACCAAAGATGCTGGAACCATCTCTGGACTTAATGTTGTACGTATTATTAATGAACC 1120 Query 474841 AACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||||| || ||| | |||||||| | || ||||| Sbjct 1121 GACAGCTGCGGCAATAGCTTATGGATTGGACAAGAA 1156 >seq35471 Length=529 Score = 118 bits (130), Expect = 7e-21 Identities = 188/269 (70%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 475814 TATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAAT 475873 ||||| |||||||| |||||||||||||| || || || |||| | ||| || Sbjct 2 TATGGGGCTGCTGTACAAGCAGCTATTTTGTCTGGGGTTCGGGATGAGACAACAAAGGAT 61 Query 475874 ATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATG 475933 || | || |||||||| ||||||||||| || || | ||||| | ||| || ||||| Sbjct 62 GTTCTTCTCGTTGACGTTACTCCACTTTCTTTGGGAATAGAAACGGCTGGGGGAGTTATG 121 Query 475934 ACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACT 475993 || || ||| |||| | || || | || || ||||| || || ||| | ||| Sbjct 122 ACCAAACTTGTTGAACGCAACGCTACAATTCCCCACAAAACTTCCCAAACCTTTACTACT 181 Query 475994 TATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACT 476053 ||||| |||||||| | |||| || || ||| | | |||||| ||||| || ||| Sbjct 182 TATTCGGATAATCAGCCGGCTGTTACTATTCAAGTTTATGAAGGAGAAAGGGCTTTGACT 241 Query 476054 AAAGATAATAACAAACTTGGAACTTTTAA 476082 || | |||| ||| || || |||||| Sbjct 242 AAGGTGAATA--AAAATTATAATTTTTAA 268 >seq2010 Length=7604 Score = 118 bits (130), Expect = 7e-21 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 297442 ATTGATCAAACAAGAGGTTGGTTTTATACTTTATTAGTTCTTTCTACAGCTATATTTAAC 297501 ||||| ||||| | |||||||| ||||||||||| ||| |||| |||||| | || || Sbjct 3350 ATTGACCAAACTCGTGGTTGGTTCTATACTTTATTGGTTATTTCAACAGCTCTTTTCAAT 3291 Query 297502 AAACCAGCATTTAAAAATGTAATTGTTACAGGAATTGTTAACGCAGCTGATGGACAAAAA 297561 ||| |||| |||||| ||||| || || | || || | || ||| | ||| Sbjct 3290 CGTCCACCATTCAAAAATTTAATTTGTAACGGTTTAGTATTAGCTTCAGACGGAAATAAA 3231 Query 297562 ATGTCAAAAAGTAAAGGTAATTATCCTGATCCAA-ATATTTTGATGGATAAATATGGTGC 297620 ||||| ||||||||| |||||||||||||||| | ||| | || ||||| || || Sbjct 3230 ATGTCTAAAAGTAAAAAGAATTATCCTGATCCAATGGAGATTG-TTGAAAAATACGGGGC 3172 Query 297621 AGATACTTTACGTCTTTATTTA 297642 |||| || | || ||||||||| Sbjct 3171 AGATGCTCTCCGACTTTATTTA 3150 >seq35495 Length=529 Score = 113 bits (124), Expect = 3e-19 Identities = 189/270 (70%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 475814 TATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGA-AACTAAATAA 475872 ||||| |||||||| |||||||||||||| || || || |||| |||||| | Sbjct 2 TATGGGGCTGCTGTACAAGCAGCTATTTTGTCTGGGGTTCGGGATGAGACAACTAAGGA- 60 Query 475873 TATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTAT 475932 | || | || ||||| || ||||||||||| || ||| | ||||| | ||| || | || Sbjct 61 TGTTCTTCTAGTTGATGTTACTCCACTTTCTTTGGGTATAGAAACGGCTGGGGGAGTGAT 120 Query 475933 GACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCAC 475992 ||| || ||| |||| | || || | || || ||||| || || |||| | || Sbjct 121 GACCAAACTTGTTGAACGCAACGCTACAATTCCCCACAAAACTTCCCAAACATTTACTAC 180 Query 475993 TTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCAC 476052 |||||| |||||||| | |||| || || ||| | | ||| || || ||| || || Sbjct 181 TTATTCGGATAATCAGCCGGCTGTTACTATTCAAGTTTATGAGGGAGAGAGAGCTTTGAC 240 Query 476053 TAAAGATAATAACAAACTTGGAACTTTTAA 476082 ||| | |||| ||| || || |||||| Sbjct 241 TAAGGTGAATA--AAAATTATAATTTTTAA 268 >seq14119 Length=1895 Score = 113 bits (124), Expect = 3e-19 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 355393 TTGAGTTGTGTGAAGATATATCGTGCACTTGCATTATCTTTGCCTCCACTTAATCTTGTA 355452 || ||||| ||||| ||||| || | || |||||||| ||||| ||||| ||| Sbjct 1728 TTAAGTTGAGTGAAAATATAACGAGGTGAAGCGTTATCTTTTCCTCCTTGTAATCGAGTA 1787 Query 355453 CCAAATTGACCATTGGGAAGTAATAAATTTATGTTGTTACTTCCAACATAATTTTGTGCC 355512 |||||||||||| | || | ||||| ||| ||||| ||| |||||||||||||| ||| Sbjct 1788 CCAAATTGACCAATAGGCATTAATAGATTGATGTTATTAGAGCCAACATAATTTTGAGCC 1847 Query 355513 ATTTTTATTATAGTTTCAGTCATTGACTGTTCTCCATGATGATAT 355557 | || | || ||| | | ||| |||||||||||||||||| Sbjct 1848 AAATTCACAATTGTTGACATTAATGATTGTTCTCCATGATGATAT 1892 >seq17749 Length=1438 Score = 109 bits (120), Expect = 4e-18 Identities = 170/241 (71%), Gaps = 8/241 (3%) Strand=Plus/Plus Query 817494 AAAAGGAGAATCATTTTATCAATCAAGAATGTCTGATTTAATAAATGAACT------TGA 817547 || ||||||||| ||||||||||||||||||| |||| | || ||| | ||| Sbjct 777 AAGAGGAGAATCCTTTTATCAATCAAGAATGTTATCTTTAGTCAAAGAATTAGACAATGA 836 Query 817548 TGGATTTATTGTTCAAGATAATGGAATGAAAATTA-TACGTCTTGATAACTATGAATGTC 817606 ||| || | |||| ||||| |||||||| | | ||||| | | | || Sbjct 837 AGGAATTTTAAAAGAAGAAGATGGAC-GAAAATTAATGTTTATTGATGGATGTAATATTC 895 Query 817607 CTTTAATATTAGTTAAAAGTGATGGAGGTTTTACTTATGATACTTCTGATTTAGCAGCTT 817666 |||||| | ||||||||||||||||| |||||||||||||| ||| | || | Sbjct 896 CTTTAACTGTTGTTAAAAGTGATGGAGGATTTACTTATGATACAAGTGACCTGGCTACAA 955 Query 817667 TAAAATATCGTTTATTTGAAGAAAAAGCTAATCAAATATTATATGTAGTTGATTCAGGAC 817726 |||| | | |||||||||||||| ||| || || |||||| | |||||| ||||| Sbjct 956 TAAAGCAAAGATTATTTGAAGAAAAGGCTGATTGGATCTTATATATTGTTGATAGAGGAC 1015 Query 817727 A 817727 | Sbjct 1016 A 1016 >seq13757 Length=1946 Score = 109 bits (120), Expect = 4e-18 Identities = 141/190 (74%), Gaps = 5/190 (3%) Strand=Plus/Minus Query 321723 TTTACTAATTGTGTGAGATATTCAATATTATGTTCCGTAACAATTTCATCAAATGTAAGA 321782 || ||||||| | | | | |||||||||| | ||| ||||||||| |||||| | | Sbjct 1544 TTGACTAATTTTTTTAC-TGTTCAATATTAAATGGCGTCACAATTTCAGGAAATGTTAAA 1486 Query 321783 TTTTTTGCAATAATTAATGGTAAACCAACTTCATTCAGT--GCAATATTTGGATCAGATG 321840 || | || ||| || || | |||||| || || | |||| ||||||||||| | Sbjct 1485 TTCTGAGCGATACTTCTCGGCACACCAACAGTAT-CAATAGGCAA-ATTTGGATCAGGCG 1428 Query 321841 TGATAACTGTACGACCAGACATATCAACACGTTTACCCATAAGATTTCCTCTAATACGAC 321900 | || ||||| || |||| | |||||| || || |||||||||||||| | |||||||| Sbjct 1427 TAATGACTGTTCGCGCAGAGAAATCAACTCGCTTGCCCATAAGATTTCCCCGAATACGAC 1368 Query 321901 CTTCTTTTCC 321910 ||||||| || Sbjct 1367 CTTCTTTGCC 1358 >seq40541 Length=419 Score = 107 bits (118), Expect = 1e-17 Identities = 148/203 (73%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 474675 CAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACT 474733 ||||||| || | |||||||| |||| || ||| ||| | | ||| || || | Sbjct 150 CAATGGTCTTGACTAAAATGAATGAAACGGCTGAGG-CATTTTTGGGAAAAACCGTTAAA 208 Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 ||||| ||| | ||||| ||||| || || || || |||||| ||||| || || ||| Sbjct 209 GATGCTGTA-TCACTGTGCCAGCTTACTTCAACGACAGTCAACGCCAAGCCACAAAGGAT 267 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 || |||| ||| | || |||| ||| || ||||| || || || ||||| || || || Sbjct 268 GCTGGAACGATTTCTGGACTTAGTGTCTTGCGTATCATCAACGACCCAACTGCTGCGGCT 327 Query 474854 CTTGCTTATGGTCTTGATAAGAA 474876 ||||||||||| | |||||||| Sbjct 328 ATTGCTTATGGTTTGGATAAGAA 350 >seq32922 Length=598 Score = 107 bits (118), Expect = 1e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| || ||||| || || || || || ||||||||||||||||| |||||||||| Sbjct 405 ATGCAGTCATCACTGTCCCTGCCTACTTCAACGATTCTCAACGTCAAGCTACTAAAGATG 464 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| || ||| ||||| ||| | | |||||||| ||||| || ||| Sbjct 465 CTGGTCAGATTGCTGGACTTCGAGTTTTGCGTGTAGTCAATGAACCCACAGCTGCTGCAT 524 Query 474855 TTGCTTATGGTCTTGAT 474871 | ||||||||| | ||| Sbjct 525 TAGCTTATGGTTTGGAT 541 >seq14452 Length=1849 Score = 95.1 bits (104), Expect = 8e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || |||||||| ||||| | || ||||| ||| |||| ||||||||||||||||| || Sbjct 194 GGAATTCCTCCGGCTCCACGTGGTGTTCCACAAGTTGAGGTTACTTTTGATATTGACGCC 253 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGAT 476179 ||||||||| |||||||| |||| ||||| Sbjct 254 AATGGTATTGTTAATGTTTCTGCCCGTGAT 283 >seq13607 Length=1974 Score = 95.1 bits (104), Expect = 8e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||||||||| || ||| |||| ||||| ||| |||| || || ||||||||||| || Sbjct 197 GGTATTCCTCCAGCCCCCCGAGGTGTTCCACAAGTTGAGGTGACATTTGATATTGACGCC 256 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGAT 476179 ||||||||| |||||||| |||| ||||| Sbjct 257 AATGGTATTGTTAATGTTTCTGCACGTGAT 286 >seq48301 Length=303 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 480640 AAATNAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAG 480699 ||| ||||| || |||||||| ||||| || |||||||| |||||||| ||| ||| Sbjct 284 AAACCAGACGCTGCTGATCAGGTGGAATACCCTCCTTGTCCTGAATCTTAGCTTTCACAT 225 Query 480700 CTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAA 480759 ||||||||||| | | | ||| || |||||||| || || || || ||||||| Sbjct 224 TCTCAATAGTATCCGAGGCTTCCACTTCCAGAGTAATAGTCTTTCCCGTAAGTGTCTTAA 165 Query 480760 CGAAAATTTG 480769 | |||||||| Sbjct 164 CAAAAATTTG 155 >seq5514 Length=4361 Score = 89.7 bits (98), Expect = 3e-12 Identities = 90/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 476070 TTGGAACTTTTA-ATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAA 476128 |||| || ||| ||||| | || || ||||| ||||| |||| ||||| ||||||||| Sbjct 124 TTGGGACGTTTCGATCTTTACGGCATCCCTCCAGCTCCTCGAGGCGTTCCCCAAATTGAA 183 Query 476129 GTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATC 476184 |||||||||||| | |||| ||||| ||| | ||||| |||| | || ||||| Sbjct 184 GTTACTTTTGATTTGGATGTTAATGGAATTTTACATGTTTCTGCATTGGACAAATC 239 >seq36270 Length=510 Score = 87.8 bits (96), Expect = 1e-11 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 474666 AAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAA 474724 || |||| ||||||| || | ||||| || |||| || ||| ||| | | || ||| Sbjct 312 AAGTTTCGGCAATGGTCTTGACTAAAATAAAGGAAACGGCTGAGG-CATTTTTGGGCCAA 370 Query 474725 GAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCA 474784 || | ||||| || || || | || || || ||||| || |||||| ||||| Sbjct 371 ACCGTTAAGGATGCTGTCATCACCATGCCGGCCTACTTTAACGACAGTCAACGCCAAGCC 430 Query 474785 ACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACA 474844 || || ||||| |||| ||| | | ||||||||||| ||||| || || || || || Sbjct 431 ACAAAGGATGCTGGAACGATTTCTGAACTTAATGTTTTGCGTATCATCAACGAGCCTACT 490 Query 474845 GCAGCCGCACTTGCTTATGG 474864 || || || |||||||||| Sbjct 491 GCTGCGGCTATTGCTTATGG 510 >seq11241 Length=2422 Score = 87.8 bits (96), Expect = 1e-11 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 269129 TCGGTCCACGCGCTCTAGAGTGAGTTTTATCGCCCACCATTTGTTTTAAACGCTGATAAT 269188 |||| || | ||||||||| ||| |||| || ||||||| ||||||||||| ||||||| Sbjct 2208 TCGGCCCTCTCGCTCTAGAATGAATTTTGTCATCCACCATATGTTTTAAACGTTGATAAT 2267 Query 269189 ATGTCGGACCAATAAATA 269206 |||| || |||||||||| Sbjct 2268 ATGTTGGGCCAATAAATA 2285 >seq43004 Length=377 Score = 86.0 bits (94), Expect = 4e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| || |||||||| |||||| || || || |||||||| || |||||| Sbjct 162 CGAAGACGAAGAACAAGATGGAGTGTAGACTCCTTCTGAATGTTATAATCCGCAAGAGTT 103 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAAT 480643 | | ||||||||| ||||||||||||||||| Sbjct 102 CGGCCATCTTCAAGCTGCTTTCCAGCAAAAAT 71 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265661443767008