Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq19735 84.2 3e-11 seq9660 82.4 9e-11 >seq19735 Length=1257 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353 |||| ||||| || | |||||||| || ||||| || || ||||||||| ||||||| Sbjct 1121 CAGAAATATTAGCAGGAAGTGCTTGAGCAGTGCAAATATTGGAGGTTGCTTTATCTCTTC 1180 Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402 ||||||||| ||||||||||| || | ||| | || ||| ||| || Sbjct 1181 GAATATGCTGTTCTCTAGTTTGAAGAGTTAAACGATAAGCAATATTTCC 1229 >seq9660 Length=2816 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 139295 AGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCT 139354 ||| ||||| || | |||||||| || ||||| || || ||||||||| ||||||| Sbjct 258 AGAAATATTAGCAGGAAGTGCTTGAGCAGTGCAAATATTGGAGGTTGCTTTATCTCTTCG 199 Query 139355 AATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402 ||||||||| ||||||||||| || | ||| | || ||| ||| || Sbjct 198 AATATGCTGTTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578573588873920