Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq17717 109 7e-19 seq4887 86.0 7e-12 >seq17717 Length=1442 Score = 109 bits (120), Expect = 7e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||||| ||||||||| | ||||| ||||||||||| | || |||||||| Sbjct 140 GAAACTGGAATTCCATATATGGTCTACAAAGATGCTTGTAATAGTAAATCAAACCAAAAA 199 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 |||||||||||||| || ||||||||||||| || |||||| | || || || | Sbjct 200 AATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATACTTCTCCT 259 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGC 76059 || || |||||||||||||||| || || || Sbjct 260 GAAGAAGTTTCTGTTTGCAATTTGGCTTCGATTGC 294 >seq4887 Length=4728 Score = 86.0 bits (94), Expect = 7e-12 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 175294 GGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCG 175353 || || |||||| | ||| ||||| || || ||||| | || ||| ||| | || Sbjct 4482 GGTGCTCTTCTCACTGGTCCACCAGGAACTGGCAAGACTTTGCTTGCCAAAGCAACTGCA 4423 Query 175354 GGTGAATCAAATGTCCCATTCATCCAGTGCT-CTGCCGCAAACTTTGTGGAGATGTTTGT 175412 || || | ||||| || |||||| | || | ||| | || | || | ||||||||||| Sbjct 4422 GGAGAGGCGAATGTACCTTTCATC-ACTGTTTCTGGCTCAGAATTCCTTGAGATGTTTGT 4364 Query 175413 TGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGA-AAATCAACCAT 175471 |||||| || || | | || | ||| | || ||||| || || | |||||| || | Sbjct 4363 TGGTGTTGGCCCCGGACGTGTGAGGGATATGTTCGAAATGGCACGAAAGAAATCA-CCTT 4305 Query 175472 GTATTGTCTTCATTGATGAGATTGATGC 175499 | ||| | || ||||||||||||||||| Sbjct 4304 GCATTCTTTTTATTGATGAGATTGATGC 4277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596131896884480