Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq20662 102 2e-16 seq8547 96.9 7e-15 >seq20662 Length=1182 Score = 102 bits (112), Expect = 2e-16 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| |||||| ||||| | |||||| | |||||||| | |||| ||| || ||||| Sbjct 500 GTTCAATAATTCCACCACGAAGACGGAGAACTAAATGAAGTGTAGACTCCTTTTGGATAT 441 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGAT 192407 ||||||||| || || ||| |||| ||||||||||||||||||||||| Sbjct 440 TATAATCAGCCAAAGTGCGTCCATCCTCCAATTGTTTACCAGCAAAGAT 392 >seq8547 Length=3126 Score = 96.9 bits (106), Expect = 7e-15 Identities = 174/251 (69%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 49820 TAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGT 49879 || ||| |||||||| ||| | || || || | ||| || ||||||||||| || Sbjct 279 TAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 220 Query 49880 TAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAA 49939 | ||| ||||| | || | || || |||||||| |||| |||||||| | ||| || Sbjct 219 CAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 160 Query 49940 GAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATCAT 49998 |||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 159 GAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTTTA 102 Query 49999 CTAATA-TCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATA 50057 ||| | ||||| | ||||||||| |||||||| |||||| || | | |||| Sbjct 101 CTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAATATA 42 Query 50058 GCTTTAAATAA 50068 || |||||||| Sbjct 41 GCATTAAATAA 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983739629199600