Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5570 98.7 8e-16 seq42683 95.1 9e-15 seq4398 89.7 4e-13 seq3537 87.8 1e-12 seq48301 82.4 6e-11 seq43004 82.4 6e-11 >seq5570 Length=4331 Score = 98.7 bits (108), Expect = 8e-16 Identities = 99/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 ||||| |||||||| ||||| || |||||||| |||||| | || ||| |||| | || Sbjct 4273 TGCTGGTCCGGCGGGATACCTTCCTTGTCTTG-AATTTTGGCCTTAACATTTTCAATTGT 4215 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| ||| ||||||||||| || || || ||||| || ||||| || || ||||| Sbjct 4214 GTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTTTTTACGAAGATCTG 4155 Query 29784 CATTTT 29789 ||| || Sbjct 4154 CATATT 4149 >seq42683 Length=382 Score = 95.1 bits (104), Expect = 9e-15 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 ||||| || |||||||| |||||||||||||| |||||| | |||||| |||| | || Sbjct 291 TGCTGGTCTGGCGGAATCCCCTCTTTGTCTTG-AATTTTGGCTTTGACGTTTTCAATCGT 233 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || || ||||||||||| ||||| ||||| || || || ||||| || || || Sbjct 232 ATCCGATGCCTCAACTTCAAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTG 173 Query 29784 CATT 29787 |||| Sbjct 172 CATT 169 >seq4398 Length=5060 Score = 89.7 bits (98), Expect = 4e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTT 29716 ||||| |||||||| || ||||| || || |||||||| |||||||| || || ||| Sbjct 4743 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG-AATTTTTGCCTTCACGTTTT 4685 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | || |||||| || ||||||||||| || ||||| ||||| | || || || | Sbjct 4684 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGA 4625 Query 29777 ATATCTGCATTTT 29789 | |||||||| || Sbjct 4624 AGATCTGCATATT 4612 >seq3537 Length=5734 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/129 (77%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || ||||| ||||| ||||||||||| ||||| |||||||| || ||| | || | || Sbjct 3260 TGTTGATCAGGCGGGATACCCTCTTTATCTTG-AATTTTTGCCTTAACATTCTCAATGGT 3318 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || || || ||||| |||||||| || || | || || ||||| ||||| Sbjct 3319 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 3378 Query 29784 CAT-TTTAA 29791 ||| ||||| Sbjct 3379 CATATTTAA 3387 >seq48301 Length=303 Score = 82.4 bits (90), Expect = 6e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 |||||||| || ||||||||||| ||||| || ||| || | ||| ||| | || | ||| Sbjct 273 TGCTGATCAGGTGGAATACCCTCCTTGTCCTG-AATCTTAGCTTTCACATTCTCAATAGT 215 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || ||| ||||| ||||| ||||| || || || | || |||||||| || || Sbjct 214 ATCCGAGGCTTCCACTTCCAGAGTAATAGTCTTTCCCGTAAGTGTCTTAACAAAAATTTG 155 Query 29784 CATT 29787 |||| Sbjct 154 CATT 151 >seq43004 Length=377 Score = 82.4 bits (90), Expect = 6e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 ||||| || |||||||| |||||||||||||| |||||| | ||||| |||| | || Sbjct 291 TGCTGGTCTGGCGGAATCCCCTCTTTGTCTTG-AATTTTAGCCTTGACGTTTTCAATCGT 233 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || || || || ||||| ||||| ||||| || || || ||||| || || || Sbjct 232 ATCCGATGCCTCAACCTCGAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTG 173 Query 29784 CATT 29787 |||| Sbjct 172 CATT 169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384943630556136