Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq51208 131 1e-24 seq35495 131 1e-24 seq40541 127 2e-23 seq53396 125 5e-23 seq53960 118 8e-21 seq48304 113 3e-19 seq35471 111 1e-18 seq32922 100 2e-15 seq10346 100 2e-15 seq44846 91.5 1e-12 seq13757 91.5 1e-12 seq36270 89.7 4e-12 seq1633 87.8 1e-11 seq20442 86.0 5e-11 >seq51208 Length=271 Score = 131 bits (144), Expect = 1e-24 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||| | ||||| || | ||||||||| ||||||||||| ||||||| ||| ||| Sbjct 188 TTCTTATCCAATCCATAAGCCAGAGCAGCAGCTGTTGGTTCATTTATAATTCGCAATACA 129 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||||||| || || |||||||| ||||| | ||| || |||||||| Sbjct 128 TTAAGTCCAGCAATCTGACCAGCGTCTTTAGTTGCTTGACGCTGTCCGTCATTAAAATAG 69 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || |||||||||| || |||||| ||| | |||| |||||| |||||||| Sbjct 68 GCTGGAACAGTAACGACAGCATCTCGAACTGGATGGCCAAGATAAGCTTCGGCTGTTTGC 9 Query 282512 TTCATTT 282518 ||| ||| Sbjct 8 TTCCTTT 2 >seq35495 Length=529 Score = 131 bits (144), Expect = 1e-24 Identities = 184/256 (72%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 281530 ATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGT 281589 ||| ||||| | ||||| || || || ||||| ||| ||| |||||||| | | Sbjct 256 ATTTTTATTCACCTTAGTCAAAGCTCTCTCTCCCTCATAAACTTGAATAGTAACAGCCGG 197 Query 281590 TTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCT 281649 |||||||| |||||||| |||||| | ||| |||| |||||||| | ||| | Sbjct 196 CTGATTATCCGAATAAGTAGTAAATGTTTGGGAAGTTTTGTGGGGAATTGTAGCGTTGCG 137 Query 281650 ATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 281709 |||| || |||||||| | || ||||| ||||||| ||| | |||||| ||||| || Sbjct 136 TTCAACAAGTTTGGTCATCACTCCCCCAGCCGTTTCTATACCCAAAGAAAGTGGAGTAAC 77 Query 281710 ATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTT 281768 ||||||||| | || || | | | | ||||| ||| |||| ||||||||||| Sbjct 76 ATCAACTAGAAGAACATCCTTAGTTGTCTCATCCCGAACCCCAGACAA-AATAGCTGCTT 18 Query 281769 GAATAGCAGCACCATA 281784 | | |||||| ||||| Sbjct 17 GTACAGCAGCCCCATA 2 >seq40541 Length=419 Score = 127 bits (140), Expect = 2e-23 Identities = 193/272 (71%), Gaps = 7/272 (3%) Strand=Plus/Minus Query 282265 CAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTT 282324 ||||| || |||||| |||||||| |||| |||||||| | || || || Sbjct 417 CAAAATAGACACATCAAAAGTTCCACCGCCCAAGTCAAAAATCAAGACGTTGTGCTC--- 361 Query 282325 GTCTTGG---TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 | ||||| || ||||| | |||||| |||| ||| ||||||||||| || || || || Sbjct 360 GCCTTGGCCTTTCTTATCCAAACCATAAGCAATAGCCGCAGCAGTTGGGTCGTTGATGAT 301 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 | ||| ||| |||| |||| ||| |||| ||||| || |||||||| | ||| || Sbjct 300 ACGCAAGACACTAAGTCCAGAAATCGTTCCAGCATCCTTTGTGGCTTGGCGTTGACTGTC 241 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCT 282501 ||| || || || || ||||| || || |||||| | || |||||| | | | || Sbjct 240 GTTGAAGTAAGCTGGCACAGTGAT-ACAGCATCTTTAACGGTTTTTCCCAAAAATGCCTC 182 Query 282502 TGCTGTTTGTTTCATTTTACTTAAAATCATTG 282533 || |||| ||||||||| | || | ||||| Sbjct 181 AGCCGTTTCATTCATTTTAGTCAAGACCATTG 150 >seq53396 Length=249 Score = 125 bits (138), Expect = 5e-23 Identities = 170/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 ||||| || |||||||| ||||| | | ||| | ||| || | | || | ||| Sbjct 16 CGATTGTCGAAATCTTCGCCTCCAAGGTGAGTGTCTCCAACAGTCGACTTGACCTCAAAA 75 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | |||||||||| || ||||| || || ||| ||||||||||||| |||||||| Sbjct 76 ATACCATCTTCAATAGTCAAAATAGACACGTCAAAAGTTCCACCACCCAAGTCAAAAATC 135 Query 282308 AGTACATTCATTTCTTTGTCTTGG---TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364 || || || || | ||||| || ||||| | |||||| |||| ||| |||||| Sbjct 136 AGAACGTTGCGCTC---GCCTTGGCGCTTCTTATCCACACCATAAGCAATAGCCGCAGCA 192 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTT 282420 ||||| || || || || | |||||||||||| |||| ||| |||| ||||| || Sbjct 193 GTTGGCTCGTTGATGATACGCAAAACATTAAGTCCAGAAATCGTTCCAGCATCCTT 248 >seq53960 Length=243 Score = 118 bits (130), Expect = 8e-21 Identities = 160/220 (73%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 282245 AAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAA 282304 |||| |||||||||| || ||||| || ||||||| |||||||| |||| |||||| Sbjct 26 AAAATACCATCTTCAATAGTCAAAATAGAAACATCAAAAGTTCCACCGCCCAAGTCAAAA 85 Query 282305 ATAAGTACATTCATTTCT--TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAG 282362 || | || || || ||| | | || ||||| | |||||| ||| || |||| Sbjct 86 ATCAAGACGTTGCGCTCGCATTGGCCT--TTCTTATCCAAACCATAGTCAATGGC-GCAG 142 Query 282363 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 282422 ||||||| || || || || | |||||||||||| |||| ||| | || ||||| || | Sbjct 143 CAGTTGGCTCGTTGATGATACGCAAAACATTAAGTCCAGAAATCGTCCCAGCATCCTTTG 202 Query 282423 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 ||||||| | ||| || || || || ||||| ||||| Sbjct 203 TGGCTTGGCGTTGACTGTCATTGAAGTACGCAGGCACAGT 242 >seq48304 Length=303 Score = 113 bits (124), Expect = 3e-19 Identities = 193/278 (69%), Gaps = 8/278 (3%) Strand=Plus/Minus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 ||||| ||||||||||| ||||| || | ||| | || | || | | || | ||| Sbjct 274 CGATTGTCAAAATCTTCGCCTCCAAAGTGAGTCT--CCAGCAGTCGACTTGACATCAAAA 217 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | ||||||||||| || || || || || ||| ||||||| | || |||||||| Sbjct 216 ATTCCATCTTCAATAGTCAGAATAGATACGTCAAAAGTTCCACAGCACAAGTCAAAAATC 157 Query 282308 AGTACATTCATTTCTTTGTCTTGG---TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364 | || || || | | ||| || ||||| | |||||| ||| || |||||| Sbjct 156 AAAACGTTGTGCTC---GCCCTGGCCCTTCTTATCCAAACCATAATCAATGGCCGCAGCA 100 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424 ||||| || || || || | |||||| |||| |||| ||| |||| ||||| || ||| Sbjct 99 GTTGGCTCGTTGATGATACGCAAAACGATAAGTCCAGAAATCGTTCCAGCATCCTTTGTG 40 Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 ||||| | ||| || || || || ||||| ||||| Sbjct 39 GCTTGGCGTTGACTGTCATTGAAGTACGCAGGCACAGT 2 >seq35471 Length=529 Score = 111 bits (122), Expect = 1e-18 Identities = 182/258 (71%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 281530 ATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGT 281589 ||| ||||| | ||||| || | ||| || || ||| ||| |||||||| | | Sbjct 256 ATTTTTATTCACCTTAGTCAAAGCCCTTTCTCCTTCATAAACTTGAATAGTAACAGCCGG 197 Query 281590 TTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCT 281649 |||||||| |||||||| ||||| | ||| |||| |||||||| | ||| | Sbjct 196 CTGATTATCCGAATAAGTAGTAAAGGTTTGGGAAGTTTTGTGGGGAATTGTAGCGTTGCG 137 Query 281650 ATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 281709 |||| || |||||||||| || ||||| ||||||| || | |||||| ||||| || Sbjct 136 TTCAACAAGTTTGGTCATAACTCCCCCAGCCGTTTCTATTCCCAAAGAAAGTGGAGTAAC 77 Query 281710 ATCAACTAGGACAATAT--TTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGC 281766 ||||| || | || || |||| || | |||| ||| |||| ||||||||| Sbjct 76 GTCAACGAGAAGAACATCCTTTGTTGTCT--CATCCCGAACCCCAGACAA-AATAGCTGC 20 Query 281767 TTGAATAGCAGCACCATA 281784 ||| | |||||| ||||| Sbjct 19 TTGTACAGCAGCCCCATA 2 >seq32922 Length=598 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282337 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 282396 ||| | |||||| || || |||||||| || |||||||| | | | |||||| ||| Sbjct 541 ATCCAAACCATAAGCTAATGCAGCAGCTGTGGGTTCATTGACTACACGCAAAACTCGAAG 482 Query 282397 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 282456 |||||||| || ||||||||||| ||||| | ||| |||||||| || || ||||| Sbjct 481 TCCAGCAATCTGACCAGCATCTTTAGTAGCTTGACGTTGAGAATCGTTGAAGTAGGCAGG 422 Query 282457 AACAGTAATAACGGCATCTG 282476 ||||| || || |||| || Sbjct 421 GACAGTGATGACTGCATTTG 402 >seq10346 Length=2631 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| || | || ||||| || |||||||||||||| | | ||||||||| |||| Sbjct 1144 CCATAAGCTATTGCCGCAGCTGTCGGTTCATTAATAATACGTACAACATTAAGTCCAGAG 1085 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || |||| |||||||| || ||||| | ||| | ||||||||| || | || |||||| Sbjct 1084 ATGGTTCCAGCATCTTTGGTAGCTTGACGTTGAGCATCGTTAAAGTAAGTCGGGACAGTA 1025 Query 282464 ATAACGGCATCTGTTACTTC 282483 | || |||| || ||||| Sbjct 1024 ACCACAGCATGCGTAACTTC 1005 >seq44846 Length=349 Score = 91.5 bits (100), Expect = 1e-12 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 637124 TTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAA 637183 |||| ||||| ||||||||||||||||| ||| |||||||| |||| ||| | | |||| Sbjct 164 TTGTTGATTACTCTTCTCCAAATATTGCAAAACAAATGCATGTTGGTCATCTTCGTTCAA 223 Query 637184 CTATTATTGGTGAATCTATT 637203 |||| |||||||| |||||| Sbjct 224 CTATAATTGGTGATTCTATT 243 >seq13757 Length=1946 Score = 91.5 bits (100), Expect = 1e-12 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 432287 AGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACG 432346 ||| ||||||||||||||| | |||||| | ||||| ||||| || ||| | ||||| || Sbjct 1357 AGGCAAAGAAGGTCGTATTCGGGGAAATCTTATGGGCAAGCGAGTTGATTTCTCTGCGCG 1416 Query 432347 TACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTAT 432406 ||||| ||||| ||||||| ||| | || | || |||||||| || | ||| Sbjct 1417 AACAGTCATTACGCCTGATCCAAATTTGCCTATTGATACTGTTGGTGTGCCGAGAAGTAT 1476 Query 432407 TGCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGA 432454 || | ||| | || ||| |||||||| || | ||||||||| Sbjct 1477 CGCTCAGAATTTAACATTTCCTGAAATTGTGACGCCATTTAATATTGA 1524 >seq36270 Length=510 Score = 89.7 bits (98), Expect = 4e-12 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| ||| |||||||| || || || || || | |||||||||||| ||| | Sbjct 510 CCATAAGCAATAGCCGCAGCAGTAGGCTCGTTGATGATACGCAAAACATTAAGTTCAGAA 451 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || |||| ||||| || |||||||| | ||| |||||||| || || || | || Sbjct 450 ATCGTTCCAGCATCCTTTGTGGCTTGGCGTTGACTGTCGTTAAAGTAGGCCGGCATGGTG 391 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTT 282523 || || ||||| | || || || | | | || || |||| || |||||| | Sbjct 390 ATGACAGCATCCTTAACGGTTTGGCCCAAAAATGCCTCAGCCGTTTCCTTTATTTTAGTC 331 Query 282524 AAAATCATTGATGAAATTT 282542 || | ||||| |||| || Sbjct 330 AAGACCATTGCCGAAACTT 312 >seq1633 Length=8274 Score = 87.8 bits (96), Expect = 1e-11 Identities = 125/174 (72%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 399295 ATTTCTGTTTGGAATAATGGTGATGGTATTGATGTAGCAATTCATAAAGAACATAATATA 399354 || ||||| |||||||||||| ||| ||| ||| | || || || | | || || Sbjct 660 ATCTCTGTCTGGAATAATGGTCGTGGAATTCCTGTTGTCATGCACAAGGTTGAAAAGATG 601 Query 399355 TGGGTACCATCAATGATTTTTGGAGAACTTT--TAACGTCTACTAATTACGATAAAAACG 399412 | || ||| ||||||||| | |||| || | || ||| | |||||| || | |||| Sbjct 600 TATGTGCCAGAAATGATTTTCG--GAACGTTGCTTACCTCTTCAAATTACAATGACAACG 543 Query 399413 AGGAAAAAACTGTTGGTGGTAAAAATGGTTTTGGCGCTAAGCTTGCTAATATTT 399466 || |||| || ||||||| |||||||| ||| |||||||| | ||||||| Sbjct 542 AGAAAAAGACAACTGGTGGTCGAAATGGTTATGGGGCTAAGCTGACCAATATTT 489 >seq20442 Length=1199 Score = 86.0 bits (94), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 637129 GATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACTATT 637188 ||||| ||||||||||||||||| ||| |||||||| |||| ||| | | |||||||| Sbjct 1019 GATTACTCTTCTCCAAATATTGCAAAACAAATGCATGTTGGCCATCTTCGTTCAACTATA 1078 Query 637189 ATTGGTGAATCTATT 637203 |||||||| |||||| Sbjct 1079 ATTGGTGATTCTATT 1093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737748674449296