Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq9496 104 5e-17 seq42683 100 6e-16 seq5570 98.7 2e-15 seq3537 95.1 2e-14 seq43004 91.5 3e-13 >seq9496 Length=2859 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 |||||||| || || || || ||||||||||||||||| || || |||||||||||||| Sbjct 1501 TGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATCGTG 1442 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 || | || ||||| | || || ||||| || ||||| ||||| ||||| |||||| Sbjct 1441 TCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTCAAAGTCTTGACAAAAATCTGC 1382 Query 82809 AT 82810 || Sbjct 1381 AT 1380 >seq42683 Length=382 Score = 100 bits (110), Expect = 6e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || || ||||| || || || || || |||||||| || ||||| || |||||||||||| Sbjct 291 TGCTGGTCTGGCGGAATCCCCTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCAATCGTA 232 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 || | || ||||| | ||| || |||||||||||||||||||| || || || ||| Sbjct 231 TCCGATGCCTCAACTTCAAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTGC 172 Query 82809 ATT 82811 ||| Sbjct 171 ATT 169 >seq5570 Length=4331 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || || || || || || |||||||| |||||||| || || || ||||||||||| || Sbjct 4273 TGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATTGTG 4214 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| | ||| ||||| | ||| || ||||| || |||||||| ||||| || |||||| Sbjct 4213 TCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTTTTTACGAAGATCTGC 4154 Query 82809 AT 82810 || Sbjct 4153 AT 4152 >seq3537 Length=5734 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 |||||||| || || || || || ||||||||||| ||||| || ||||| ||||| ||| Sbjct 3260 TGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGTA 3319 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| || || || || | ||| || || || || || | ||||||||||| |||||| Sbjct 3320 TCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTGC 3379 Query 82809 AT 82810 || Sbjct 3380 AT 3381 >seq43004 Length=377 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || || ||||| || || || || || |||||||| || || || || |||||||||||| Sbjct 291 TGCTGGTCTGGCGGAATCCCCTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATCGTA 232 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 || | || || || | ||| || |||||||||||||||||||| || || || ||| Sbjct 231 TCCGATGCCTCAACCTCGAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTGC 172 Query 82809 ATT 82811 ||| Sbjct 171 ATT 169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981088824217944