Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq42683 93.3 4e-14 seq5570 93.3 4e-14 seq43004 91.5 1e-13 seq3537 91.5 1e-13 seq3111 87.8 2e-12 seq4398 82.4 8e-11 >seq42683 Length=382 Score = 93.3 bits (102), Expect = 4e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 134581 AAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCG 134640 ||| || ||||||||| || ||||| || || ||||| ||||||||||| |||||| | Sbjct 302 AAACCAGACGCTGCTGGTCTGGCGGAATCCCCTCTTTGTCTTGAATTTTGGCTTTGAC-G 244 Query 134641 CGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTA 134699 | |||| || || || | || || || ||||| || || || || || || || ||| Sbjct 243 TTTTCAATCGTATCCGATGCCTCAACTTCAAGAGTGATAGTCTTGCCTGTCAACGTCTTA 184 Query 134700 ACGAAAATTTGCATT 134714 ||||||||||||||| Sbjct 183 ACGAAAATTTGCATT 169 >seq5570 Length=4331 Score = 93.3 bits (102), Expect = 4e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 134578 CAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGA 134637 || ||| |||||||||||| || ||||| || ||||| || ||||||||||| || | Sbjct 4287 CACAAACCAAACGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAA 4228 Query 134638 CCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTT 134697 | || | |||||| || | ||| || || ||||| ||||| || || || || |||| Sbjct 4227 CATTTTCAATTGTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTTT 4168 Query 134698 TAACGAAAATTTGCATTTT 134716 | ||||| || ||||| || Sbjct 4167 TTACGAAGATCTGCATATT 4149 >seq43004 Length=377 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/141 (77%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 134577 GCAAA-AATCAA-ACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTT 134634 ||||| || ||| ||||||||| || ||||| || || ||||| ||||||||||| | Sbjct 308 GCAAACAAACAAGACGCTGCTGGTCTGGCGGAATCCCCTCTTTGTCTTGAATTTTAGCCT 249 Query 134635 TGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 |||| | | |||| || || || | || || |||||||| || || || || || || Sbjct 248 TGAC-GTTTTCAATCGTATCCGATGCCTCAACCTCGAGAGTGATAGTCTTGCCTGTCAAC 190 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 189 GTCTTAACGAAAATTTGCATT 169 >seq3537 Length=5734 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 134582 AATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGC 134641 || ||||||||| ||||| ||||| || || ||||| |||||||||||| || || Sbjct 3250 AACCAAACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATT 3309 Query 134642 GTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701 || | || || || | || || ||||||||||| ||||| ||||| | ||| || || Sbjct 3310 CTCAATGGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTAC 3369 Query 134702 GAAAATTTGCATTTT 134716 ||||| ||||| || Sbjct 3370 AAAAATCTGCATATT 3384 >seq3111 Length=6167 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 134582 AATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGC 134641 || || |||||||||||| || || |||||||| || || |||||||| ||||| Sbjct 6035 AACCAGACGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCTGAATTTTGGCCTTGACATT 6094 Query 134642 GTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701 || | ||||| || | || || ||||| || || || || || || |||||||| || Sbjct 6095 TTCTATAGTGTCAGATGCCTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCAC 6154 Query 134702 GAAAATTTGCATT 134714 ||| ||||||||| Sbjct 6155 GAAGATTTGCATT 6167 >seq4398 Length=5060 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 134580 AAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACC 134639 |||| ||| ||||||||||| || || |||||||| || |||||||||||| || || Sbjct 4748 AAAACCAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACG 4689 Query 134640 GCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTA 134699 || | || || || | || || || ||||| || ||||| || || | ||| || Sbjct 4688 TTTTCGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTT 4629 Query 134700 ACGAAAATTTGCATTTTG 134717 ||||| || ||||| ||| Sbjct 4628 ACGAAGATCTGCATATTG 4611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505027589193920