Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq49867 116 5e-21 seq8547 96.9 5e-15 seq12895 93.3 6e-14 seq57627 87.8 2e-12 seq12694 87.8 2e-12 seq20457 86.0 9e-12 >seq49867 Length=286 Score = 116 bits (128), Expect = 5e-21 Identities = 177/252 (70%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 69780 ATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATA 69839 |||| | ||| || ||| |||||||| ||||| || || |||||||||||||| || | Sbjct 3 ATTAAAAACTTGCAACATTGGAATAATTCCATTCGAATTTCCATTTGTTCCAGAGATCAA 62 Query 69840 ACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGAT 69899 | ||| || ||||| | ||| || || || |||||||| ||| ||| || || Sbjct 63 AGAACCTGAAGCACGAATTGAATGAATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAAT 122 Query 69900 TAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAG 69959 ||||||||| || | ||| ||| | || || || || ||| | | ||| ||| Sbjct 123 ATAAGCACAACGATTAATTGTTTCAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAG 182 Query 69960 AAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGC 70019 | |||||| ||| | ||| || || | || ||||| || ||||| || ||||| || Sbjct 183 CAAAAAACAAGAAGAAAGTTGTGGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGC 242 Query 70020 GTGAGTGAACCA 70031 |||||| ||||| Sbjct 243 GTGAGTAAACCA 254 >seq8547 Length=3126 Score = 96.9 bits (106), Expect = 5e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAAT 39658 ||||| | || | || || || || || | ||| || || ||||||| | ||||||| Sbjct 293 AAATGCTGGAAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAAT 234 Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 || ||| ||| ||||||||||| ||| || || || |||||||| || |||||| Sbjct 233 TCATTACTTTGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 174 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAA 39761 ||| |||||| ||||| || || || || || ||||| |||| Sbjct 173 AAACTTCCAGAGAAGAATATACCCTCAACCGCGGCAAAAGCAA 131 >seq12895 Length=2090 Score = 93.3 bits (102), Expect = 6e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 || ||||| | || |||||||||||||||||||| || | || || ||| ||| Sbjct 1634 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 1575 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA-TGAAAAGTC 70202 ||| ||| ||||| ||| ||| || |||||||| |||||||| | || |||||| || Sbjct 1574 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 1516 Query 70203 TCTTTCGTAAATAATAACAGAATTTAGTTT 70232 | || |||||||| || ||||| ||||| Sbjct 1515 ACGATCATAAATAATTACTGAATTGAGTTT 1486 >seq57627 Length=208 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| ||| ||||| ||||| ||||||||||||||| || |||||||| || Sbjct 171 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 112 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC-TGAACAAAA 39990 || |||||||| |||||||| | || || | ||||| || || ||| ||||| Sbjct 111 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAA 57 >seq12694 Length=2124 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 || ||||| | || |||||||||||||||||||| || | || || ||| ||| Sbjct 1697 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 1638 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA-TGAAAAGTC 70202 ||| ||| ||||| ||| ||| || |||||||| |||||||| | || || ||| || Sbjct 1637 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 1579 Query 70203 TCTTTCGTAAATAATAACAGAATTTAGTTT 70232 | || |||||||| || ||||| ||||| Sbjct 1578 ACGATCATAAATAATTACTGAATTGAGTTT 1549 >seq20457 Length=1198 Score = 86.0 bits (94), Expect = 9e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 ||| ||| |||| ||||| | ||||||| |||||||| |||||||||||| ||||| Sbjct 354 ATAAAGCTGTTCAAATTCCTGTCCCCAACACTCATCCAAGTTAGGACATTCATTCGGACA 413 Query 69567 CATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 ||| || ||||| | |||||||| | || || |||||||| Sbjct 414 CATTAAAGACCAAATGTCATCATCTCTCACACGCTTCATAAA 455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686404815013440