Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq57627 111 1e-19 seq8547 95.1 1e-14 >seq57627 Length=208 Score = 111 bits (122), Expect = 1e-19 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||||| |||||||||||| ||||||| || || ||||||||||| ||||||||||| Sbjct 55 CGTTTTGCTCAAGAAGTTCAAATACCAGAGGCTCGTTGTTTTTATGGATTTCAAATTGCT 114 Query 43964 ATAGAAAATATTCATTCGGAAATGTA 43989 || |||||||||||||| |||||||| Sbjct 115 ATTGAAAATATTCATTCAGAAATGTA 140 >seq8547 Length=3126 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175 ||| ||||| ||||| || | || ||||| | || || || || ||||| || ||| Sbjct 111 TTCATTTGGTGAACGTCTCATTGCTTTTGCCGCGGTTGAGGGTATATTCTTCTCTGGAAG 170 Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 ||||| || || |||||| |||||||||| |||| |||||||| |||| || Sbjct 171 TTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTATATGCCTGGACTGACACAAAGTAA 230 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 ||| ||||| ||| |||||||| | ||| | ||||||||||| Sbjct 231 TGAATTAATTTCTCGAGATGAAGGACTTCATCGAGATTTTGCTTG 275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397171676869480