Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4887 86.0 8e-12 >seq4887 Length=4728 Score = 86.0 bits (94), Expect = 8e-12 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTT-TCGCGGGCGATTTCAAAGAG 11688 ||||||||||||||||| || | ||| || || |||||| | || || ||||| || | Sbjct 4277 GCATCAATCTCATCAATAAAAAGAATGCAAGG-TGATTTCTTTCGTGCCATTTCGAACAT 4335 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAG-AGC 11747 ||| | || | | || || ||||||||||||||||| | || | || | ||| | | Sbjct 4336 ATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGGAATTCTGAGCCAGAAAC 4395 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 | | |||||| || ||||| | || || || | ||| ||| || | ||||| || | Sbjct 4396 AGT-GATGAAAGGTACATTCGCCTCTCCTGCAGTTGCTTTGGCAAGCAAAGTCTTGCCAG 4454 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCC 11835 | ||||| ||| | |||||| || || Sbjct 4455 TTCCTGGTGGACCAGTGAGAAGAGCACC 4482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627571212921600