Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4887 105 8e-18 >seq4887 Length=4728 Score = 105 bits (116), Expect = 8e-18 Identities = 158/218 (72%), Gaps = 5/218 (2%) Strand=Plus/Plus Query 9695 TTTCCCACG-GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTT-TCGCGAGCGA 9752 ||||||| ||||||||||||||||| || | ||||| || |||||| | || || | Sbjct 4267 TTTCCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGG-TGATTTCTTTCGTGCCA 4325 Query 9753 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812 ||| || | ||||| ||||| || ||| ||||||||||||||||| | || | || Sbjct 4326 TTTCGAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGGAATTCTG 4385 Query 9813 CGGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9871 | | | |||| | |||||| || ||||| | || || ||| | ||| ||| || | | Sbjct 4386 AGCCAGAAACAGT-GATGAAAGGTACATTCGCCTCTCCTGCAGTTGCTTTGGCAAGCAAA 4444 Query 9872 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 ||||| || || ||||| ||| | ||| || ||||| Sbjct 4445 GTCTTGCCAGTTCCTGGTGGACCAGTGAGAAGAGCACC 4482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582832861551040