Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq43004 134 2e-26 seq42683 125 8e-24 seq48301 120 3e-22 seq3111 118 1e-21 seq3537 109 6e-19 seq9496 105 8e-18 seq7417 102 9e-17 seq5570 96.9 4e-15 seq50049 95.1 1e-14 seq4398 95.1 1e-14 seq49882 91.5 2e-13 seq27592 89.7 6e-13 seq24475 89.7 6e-13 seq20662 84.2 2e-11 >seq43004 Length=377 Score = 134 bits (148), Expect = 2e-26 Identities = 107/129 (83%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || |||||| | || ||||||||||| ||||| ||||||||| || Sbjct 169 AATGCAAATTTTCGTTAAGACGTTGACAGGCAAGACTATCACTCTCGAGGTTGAGGCATC 228 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| ||| | |||||||||||||| ||||| ||||| ||||| |||||||| Sbjct 229 GGATACGATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAGGGGATTCCGCCAGACCA 288 Query 27525 GCAGCGTCT 27533 ||||||||| Sbjct 289 GCAGCGTCT 297 >seq42683 Length=382 Score = 125 bits (138), Expect = 8e-24 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || |||||| | || ||||||||||| |||||||| |||||| || Sbjct 169 AATGCAAATTTTCGTTAAGACGTTGACAGGCAAGACTATCACTCTTGAAGTTGAGGCATC 228 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| ||| | || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 229 GGATACGATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAGGGGATTCCGCCAGACCA 288 Query 27525 GCAGCGTCT 27533 ||||||||| Sbjct 289 GCAGCGTCT 297 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 ||||||||||| |||||||| || |||| || || || |||||||| || | |||||| Sbjct 71 ATTTTTGCTGGAAAGCAACTTGAAGATGGCCGAACTCTTGCAGACTACAACATTCAAAAG 130 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || || || |||||||| || ||||||| ||||||||| Sbjct 131 GAGTCTACACTTCATCTTGTTCTGCGTCTCCGCGGTGGA 169 >seq48301 Length=303 Score = 120 bits (132), Expect = 3e-22 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||| || |||||||||||||| || || || | Sbjct 151 AATGCAAATTTTTGTTAAGACACTTACGGGAAAGACTATTACTCTGGAAGTGGAAGCCTC 210 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| ||| |||| ||||| ||||||||||||||||| ||||| || || || Sbjct 211 GGATACTATTGAGAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATTCCACCTGATCA 270 Query 27525 GCAGCGTCT 27533 ||||||||| Sbjct 271 GCAGCGTCT 279 >seq3111 Length=6167 Score = 118 bits (130), Expect = 1e-21 Identities = 184/275 (67%), Gaps = 46/275 (17%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || || | || || |||||||| || || || |||||| || Sbjct 6167 AATGCAAATCTTCGTGAAAACTTTGACTGGGAAGACTATCACCCTCGAAGTTGAGGCATC 6108 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | |||| | ||||| ||||||||||||||||| || ||||| ||||| || Sbjct 6107 TGACACTATAGAAAATGTCAAGGCCAAAATTCAGGACAAGGAAGGCATTCCACCAGATCA 6048 Query 27525 GCAGCGTC-------------------TAATT---------------------------T 27538 |||||||| ||||| | Sbjct 6047 GCAGCGTCTGGTTCGTTATCCTATATGTAATTTTATAGCTCATTTCAAATTTTCAGATCT 5988 Query 27539 TTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAAT 27598 | ||||| |||||||||||||| | |||||| || || ||||| || | || ||||| | Sbjct 5987 TCGCTGGAAAGCAACTCGAGGACGGTCGTACTCTTGCTGACTACAACATTCAGAAGGAGT 5928 Query 27599 CCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | |||||||| | |||||||||||||| |||||| Sbjct 5927 CGACTCTTCACTTGGTCTTGCGTCTTCGAGGTGGA 5893 >seq3537 Length=5734 Score = 109 bits (120), Expect = 6e-19 Identities = 191/290 (66%), Gaps = 46/290 (16%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || ||||| || ||||||||||| ||||||||| | | Sbjct 3381 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 3322 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||| |||||||| || || ||||| || || || || || Sbjct 3321 GATACCATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAGGGTATCCCGCCTGATCAA 3262 Query 27526 CAGCGT----------------CTAATT------------------------------TT 27539 |||||| | |||| || Sbjct 3261 CAGCGTTTGGTTGGTATATTTCCCAATTTTCTCTCAAAAAATCAGTCTTTTTAAGATCTT 3202 Query 27540 TGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATC 27599 ||||||||||||||| || |||| || ||| | || || ||||| |||||||||| || Sbjct 3201 TGCTGGTAAGCAACTTGAAGATGGACGAACCTTGGCTGATTATAACATCCAAAAGGAGTC 3142 Query 27600 CACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGTTTTT 27649 || ||||| |||| || |||||||| |||||| | || || | |||| Sbjct 3141 TACACTTCACTTAGTTTTACGTCTTCGTGGTGGAAAGGTATATATATTTT 3092 >seq9496 Length=2859 Score = 105 bits (116), Expect = 8e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| | ||||| ||||||||||| ||||| |||||| || Sbjct 1380 ATGCAGATTTTTGTCAAGACTTTGACCGGAAAGACTATTACGCTTGAAGTTGAGGCATCC 1439 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||||| || ||||| || |||||||| ||||| || || || Sbjct 1440 GACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGATCAA 1499 Query 27526 CAGCGT 27531 |||||| Sbjct 1500 CAGCGT 1505 >seq7417 Length=3511 Score = 102 bits (112), Expect = 9e-17 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || |||||||| ||||| |||||||||| ||| || || || ||||| || |||||||| Sbjct 3429 ATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTCGCTGACTACAACATCCAAAAG 3370 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || ||||| ||||| | ||||||||||||||||| ||| Sbjct 3369 GAGTCCACGCTTCACTTGGTCTTGCGTCTTCGCGGAGGA 3331 >seq5570 Length=4331 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || ||| | || || ||||| || |||||||| ||||| | | Sbjct 4152 ATGCAGATCTTCGTAAAAACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAAGCCTCT 4211 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||||| |||||||| |||||||| || || || || |||||| Sbjct 4212 GACACAATTGAAAATGTTAAGGCCAAAATTCAAGACAAGGAAGGTATCCCGCCGGACCAG 4271 Query 27526 CAGCGT 27531 |||||| Sbjct 4272 CAGCGT 4277 >seq50049 Length=284 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || ||||| || ||||| || || || | | Sbjct 221 ATGCAGATCTTTGTGAAGACCCTCACGGGAAAGACAATCACTCTAGAAGTGGAAGCTTCT 162 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||| || ||||||||||| || ||||| ||||| || ||| Sbjct 161 GATACCATTGAAAACGTCAAGGCCAAGATTCAGGACAAAGAAGGAATCCCTCCTGATCAG 102 Query 27526 CAGCG 27530 || || Sbjct 101 CAACG 97 >seq4398 Length=5060 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || |||||||| ||||| || ||||| | || ||||| || ||||||||| |||| ||| Sbjct 4969 ATCTTTGCTGGAAAGCAGCTTGAGGACGGGCGCACCCTTGCTGACTATAATATCCAGAAG 5028 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 ||||| ||||| ||||| || ||||||||||| Sbjct 5029 GAATCGACTCTCCATCTTGTTTTGCGTCTTCG 5060 >seq49882 Length=286 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || ||||| || || || || || || | | Sbjct 64 ATGCAGATCTTTGTGAAGACCCTCACGGGAAAGACAATCACCCTAGAAGTGGAAGCGTCT 123 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | ||||| || ||||||||||| || ||||||||||| || ||| Sbjct 124 GATACCATTGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 183 Query 27526 CAGCG 27530 || || Sbjct 184 CAACG 188 >seq27592 Length=787 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||| ||||| || ||||| | ||| || || || |||||||| |||| ||| Sbjct 82 ATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGGACTCTCGCTGACTATAACATCCAGAAG 141 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || ||||| ||||| | ||||||||||||||||| ||| Sbjct 142 GAGTCCACGCTTCACTTGGTCTTGCGTCTTCGCGGAGGA 180 >seq24475 Length=940 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||| |||||||||||||| | |||||| || || ||||| || | || ||| Sbjct 117 ATCTTCGCTGGAAAGCAACTCGAGGACGGTCGTACTCTTGCTGACTACAACATTCAGAAG 176 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || || |||||||| | |||||||||||||| || ||| Sbjct 177 GAGTCGACTCTTCACTTGGTCTTGCGTCTTCGTGGAGGA 215 >seq20662 Length=1182 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || ||||||||||| ||| | ||||||| || || | || || |||||| |||||||| Sbjct 392 ATCTTTGCTGGTAAACAATTGGAGGATGGACGCACTTTGGCTGATTATAATATCCAAAAG 451 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || || || |||||| |||| | |||||||| |||||| Sbjct 452 GAGTCTACACTTCATTTAGTTCTCCGTCTTCGTGGTGGA 490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569891963259520