Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq9496 109 5e-19 seq3537 105 6e-18 seq5570 96.9 3e-15 seq42683 93.3 4e-14 seq49882 87.8 2e-12 seq4398 87.8 2e-12 seq50049 82.4 7e-11 >seq9496 Length=2859 Score = 109 bits (120), Expect = 5e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| ||||||| ||| ||||||| |||||||| || | ||| Sbjct 1380 ATGCAGATTTTTGTCAAGACTTTGACCGGAAAGACTATTACGCTTGAAGTTGAGGCATCC 1439 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || || |||||||| || || ||||| || || |||||| Sbjct 1440 GACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGATCAA 1499 Query 27108 CAGCGTTT 27115 |||||||| Sbjct 1500 CAGCGTTT 1507 >seq3537 Length=5734 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| ||||| ||||| || |||||||||| || || || | || Sbjct 3381 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 3322 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || |||||||||||| ||||| || || || || |||||| Sbjct 3321 GATACCATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAGGGTATCCCGCCTGATCAA 3262 Query 27108 CAGCGTTT 27115 |||||||| Sbjct 3261 CAGCGTTT 3254 >seq5570 Length=4331 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || |||||||| |||| || ||| | || ||||||||||| ||| | || Sbjct 4152 ATGCAGATCTTCGTAAAAACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAAGCCTCT 4211 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||||||||||| ||||| || || || || || Sbjct 4212 GACACAATTGAAAATGTTAAGGCCAAAATTCAAGACAAGGAAGGTATCCCGCCGGACCAG 4271 Query 27108 CAGCGTTT 27115 |||||||| Sbjct 4272 CAGCGTTT 4279 >seq42683 Length=382 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| |||||| |||| ||||||||||| || | || Sbjct 170 ATGCAAATTTTCGTTAAGACGTTGACAGGCAAGACTATCACTCTTGAAGTTGAGGCATCG 229 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||| | |||||| ||||||||||||||||| || || || || || || Sbjct 230 GATACGATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAGGGGATTCCGCCAGACCAG 289 Query 27108 CAGCGT 27113 |||||| Sbjct 290 CAGCGT 295 >seq49882 Length=286 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | || || || ||||||||| |||| Sbjct 64 ATGCAGATCTTTGTGAAGACCCTCACGGGAAAGACAATCACCCTAGAAGTGGAAGCGTCT 123 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| || ||||| ||||||||||| || || || ||||| Sbjct 124 GATACCATTGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 183 Query 27108 CAGCGTTT 27115 || || || Sbjct 184 CAACGATT 191 >seq4398 Length=5060 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| ||||| || || || | || ||||||||||| || | || Sbjct 4615 ATGCAGATCTTCGTAAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCTTCT 4674 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||||||||||||||| |||||||| || || ||||| Sbjct 4675 GATACCATCGAAAACGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCTGATCAG 4734 Query 27108 CAGCGTTT 27115 ||||| || Sbjct 4735 CAGCGATT 4742 >seq50049 Length=284 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | || ||||| ||||||||| | || Sbjct 221 ATGCAGATCTTTGTGAAGACCCTCACGGGAAAGACAATCACTCTAGAAGTGGAAGCTTCT 162 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || ||||| ||||||||||| || || || ||||| Sbjct 161 GATACCATTGAAAACGTCAAGGCCAAGATTCAGGACAAAGAAGGAATCCCTCCTGATCAG 102 Query 27108 CAGCGTTT 27115 || || || Sbjct 101 CAACGATT 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434599300369920