Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq50049 118 2e-21 seq4398 114 3e-20 seq49882 113 1e-19 seq48301 93.3 1e-13 seq3537 91.5 3e-13 seq5570 87.8 4e-12 >seq50049 Length=284 Score = 118 bits (130), Expect = 2e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 ||||| || |||||||| | |||||| |||||||| ||||| || |||||||| ||| Sbjct 97 CGTTGCTGATCAGGAGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTTTCAATG 156 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 || ||||| ||| || || |||||||| |||||||||||||| ||||| ||||| | | Sbjct 157 GTATCAGAAGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGATC 216 Query 211110 TGCAT 211114 ||||| Sbjct 217 TGCAT 221 >seq4398 Length=5060 Score = 114 bits (126), Expect = 3e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 || || || |||||||||| ||||||||||| || || ||| ||||||||||||||| Sbjct 4739 CGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACGTTTTCGATG 4680 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 || ||||| || || || ||||||||||| ||||| || ||||||||||| || | | Sbjct 4679 GTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAAGATC 4620 Query 211110 TGCATTTT 211117 ||||| || Sbjct 4619 TGCATATT 4612 >seq49882 Length=286 Score = 113 bits (124), Expect = 1e-19 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 ||||| || |||||||||| |||||| |||||||| ||||| || ||||| || ||| Sbjct 188 CGTTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCAATG 129 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 || ||||| ||| || || || ||||| |||||||||||||| ||||| ||||| | | Sbjct 128 GTATCAGACGCTTCCACTTCTAGGGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGATC 69 Query 211110 TGCAT 211114 ||||| Sbjct 68 TGCAT 64 >seq48301 Length=303 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || || || ||||| |||| || ||||||||||| ||||| |||||| || || Sbjct 279 AGACGCTGCTGATCAGGTGGAATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTCTCA 220 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 || || || ||| ||| || || ||||| || ||||||||||| || ||||| ||||| Sbjct 219 ATAGTATCCGAGGCTTCCACTTCCAGAGTAATAGTCTTTCCCGTAAGTGTCTTAACAAAA 160 Query 211107 ACCTGCATT 211115 | |||||| Sbjct 159 ATTTGCATT 151 >seq3537 Length=5734 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 || ||||| ||||| || | || || || || || || ||| || || || || ||| Sbjct 3257 CGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATG 3316 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 || ||||| |||||||||||||| || || ||||| ||||||||||||||||| | | Sbjct 3317 GTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATC 3376 Query 211110 TGCATTTT 211117 ||||| || Sbjct 3377 TGCATATT 3384 >seq5570 Length=4331 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 || || ||||| || || | ||||||||||| || || || || || ||||| || Sbjct 4276 CGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATT 4217 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 ||||||||| |||||| || |||||||| |||||||| || | || ||||| || | | Sbjct 4216 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTTTTTACGAAGATC 4157 Query 211110 TGCATTTT 211117 ||||| || Sbjct 4156 TGCATATT 4149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158280268432040