Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8547 111 2e-19 seq12895 93.3 6e-14 seq12694 87.8 2e-12 seq49867 86.0 9e-12 seq57627 84.2 3e-11 >seq8547 Length=3126 Score = 111 bits (122), Expect = 2e-19 Identities = 167/233 (72%), Gaps = 7/233 (3%) Strand=Plus/Minus Query 48122 CAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAA 48181 |||||| | || | || ||| |||||||| | |||||| |||||||||| | |||||| Sbjct 294 CAAATGCTGGAAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAA 235 Query 48182 TTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGC 48241 ||| ||| ||| || || ||||| || ||||| || |||||||| ||||| || Sbjct 234 TTCATTACTTTGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGC 175 Query 48242 GAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA 48301 ||| |||||| |||||||| || || || || ||||| || | || | || || | Sbjct 174 AAAACTTCCAGAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACC--A 117 Query 48302 ACTG--GCTTCGTTGT--GTA-TCCACCGTTGTGCCCAATCAGCCTTCTTCTT 48349 | || ||||| || | | |||| || | ||||||||||| || ||||| Sbjct 116 AATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTT 64 >seq12895 Length=2090 Score = 93.3 bits (102), Expect = 6e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 78492 TGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTT 78551 || ||||| || || |||||||||||||||||||| || || ||||| || ||| Sbjct 1634 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 1575 Query 78552 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 78610 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || |||||| || Sbjct 1574 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 1516 Query 78611 TCTCTCGTAAATAATAACAGAATTTAGTTT 78640 | || |||||||| || ||||| ||||| Sbjct 1515 ACGATCATAAATAATTACTGAATTGAGTTT 1486 >seq12694 Length=2124 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 78492 TGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTT 78551 || ||||| || || |||||||||||||||||||| || || ||||| || ||| Sbjct 1697 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 1638 Query 78552 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 78610 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || || ||| || Sbjct 1637 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 1579 Query 78611 TCTCTCGTAAATAATAACAGAATTTAGTTT 78640 | || |||||||| || ||||| ||||| Sbjct 1578 ACGATCATAAATAATTACTGAATTGAGTTT 1549 >seq49867 Length=286 Score = 86.0 bits (94), Expect = 9e-12 Identities = 170/252 (67%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 78188 ATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATA 78247 |||| ||||| ||||||||||||||| || || || |||||||||||||||| || | Sbjct 3 ATTAAAAACTTGCAACATTGGAATAATTCCATTCGAATTTCCATTTGTTCCAGAGATCAA 62 Query 78248 ACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATAT 78307 | || || ||||| | |||||| | || |||||||| ||| || || || Sbjct 63 AGAACCTGAAGCACGAATTGAATGAATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAAT 122 Query 78308 TAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAG 78367 ||| ||||| || | ||| || | || || || || || | | ||| ||| Sbjct 123 ATAAGCACAACGATTAATTGTTTCAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAG 182 Query 78368 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGC 78427 | |||||| ||| | ||| || | || || || || ||||| || ||||| || Sbjct 183 CAAAAAACAAGAAGAAAGTTGTGGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGC 242 Query 78428 ATGCGTAAACCA 78439 || |||||||| Sbjct 243 GTGAGTAAACCA 254 >seq57627 Length=208 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||||| |||||||| ||||| ||||||||| || |||||||||||||| || Sbjct 171 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 112 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 || |||||||| |||||||| | || |||| || || || || | ||| ||||| Sbjct 111 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 52 Query 48521 AGCC 48524 | || Sbjct 51 AACC 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694159121501440