Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq8547 109 8e-19 seq49867 98.7 1e-15 seq57627 93.3 6e-14 seq12895 87.8 3e-12 seq12694 84.2 3e-11 >seq8547 Length=3126 Score = 109 bits (120), Expect = 8e-19 Identities = 166/234 (71%), Gaps = 7/234 (3%) Strand=Plus/Minus Query 46610 TCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTA 46669 ||||||| | || | || ||| |||||||| | |||||| |||||||||| | ||||| Sbjct 295 TCAAATGCTGGAAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTA 236 Query 46670 ATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCG 46729 |||| ||| ||| || |||||||| || || || || |||||||| || || | Sbjct 235 ATTCATTACTTTGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAG 176 Query 46730 CGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGT 46789 | ||| |||||| |||||||| || || || || || || || | || | || || Sbjct 175 CAAAACTTCCAGAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACC-- 118 Query 46790 AACTG--GCATCATTATGAA---TCCACCTTTGAGCCCAATCAGCCTTTTTCTT 46838 || || || || ||| | |||| | ||||||||||||| |||||||| Sbjct 117 AAATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTT 64 >seq49867 Length=286 Score = 98.7 bits (108), Expect = 1e-15 Identities = 173/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 76783 ATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA 76842 |||| ||||| ||||||||||||||| || || || | |||||||||||||| || | Sbjct 3 ATTAAAAACTTGCAACATTGGAATAATTCCATTCGAATTTCCATTTGTTCCAGAGATCAA 62 Query 76843 ACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGAT 76902 | || | |||||||| | ||| || || || |||||||| ||| ||| || || Sbjct 63 AGAACCTGAAGCACGAATTGAATGAATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAAT 122 Query 76903 TAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 76962 |||||| || || | ||| ||| | || || || || ||| | | ||| ||| Sbjct 123 ATAAGCACAACGATTAATTGTTTCAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAG 182 Query 76963 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGC 77022 | |||||| ||| | ||| || | || || || || || || || ||||| || Sbjct 183 CAAAAAACAAGAAGAAAGTTGTGGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGC 242 Query 77023 ATGAGTGAACCA 77034 ||||| ||||| Sbjct 243 GTGAGTAAACCA 254 >seq57627 Length=208 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| ||| ||||| ||||| |||||||||||||||||| ||||||||||| Sbjct 171 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 112 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || |||||||| |||||||| | || || | || || || ||| | ||| ||||| Sbjct 111 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 52 Query 47010 A 47010 | Sbjct 51 A 51 >seq12895 Length=2090 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 77087 TGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTT 77146 || ||||| ||||| |||||||||||||||||||| || | || || || ||| Sbjct 1634 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 1575 Query 77147 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 77205 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || |||||| || Sbjct 1574 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 1516 Query 77206 TCTTTCGTAAATAATAACCGAATTTAGTTT 77235 | || |||||||| || ||||| ||||| Sbjct 1515 ACGATCATAAATAATTACTGAATTGAGTTT 1486 >seq12694 Length=2124 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 77087 TGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTT 77146 || ||||| ||||| |||||||||||||||||||| || | || || || ||| Sbjct 1697 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 1638 Query 77147 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 77205 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || || ||| || Sbjct 1637 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 1579 Query 77206 TCTTTCGTAAATAATAACCGAATTTAGTTT 77235 | || |||||||| || ||||| ||||| Sbjct 1578 ACGATCATAAATAATTACTGAATTGAGTTT 1549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712411320030720