Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq42683 113 9e-20 seq4398 113 9e-20 seq48301 109 1e-18 seq5570 109 1e-18 seq43004 107 4e-18 seq9496 102 2e-16 >seq42683 Length=382 Score = 113 bits (124), Expect = 9e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 282971 CAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATC 283030 || ||| || ||||| |||||| ||||| |||||||| || || ||||| ||| | || Sbjct 298 CAGACGCTGCTGGTCTGGCGGAATCCCCTCTTTGTCTTGAATTTTGGCTTTGACGTTTTC 239 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || || ||||| || || ||||| |||||||| ||||| || ||||| ||||||||||| Sbjct 238 AATCGTATCCGATGCCTCAACTTCAAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAA 179 Query 283091 TATCTGCATT 283100 || |||||| Sbjct 178 AATTTGCATT 169 >seq4398 Length=5060 Score = 113 bits (124), Expect = 9e-20 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 282971 CAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATC 283030 ||| || || || ||| ||||| || ||||||||||| || ||||| || ||| | || Sbjct 4743 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACGTTTTC 4684 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 ||| || || ||||| |||||||| ||||||||||| || || || | |||||| ||||| Sbjct 4683 GATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAA 4624 Query 283091 TATCTGCATTTT 283102 |||||||| || Sbjct 4623 GATCTGCATATT 4612 >seq48301 Length=303 Score = 109 bits (120), Expect = 1e-18 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 282971 CAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATC 283030 || ||| || || ||| ||||||||||||||||| || ||||| ||||| || | || Sbjct 280 CAGACGCTGCTGATCAGGTGGAATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTCTC 221 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 ||||| ||||| ||||| ||||| ||||| || ||||| ||||| | |||||||| || Sbjct 220 AATAGTATCCGAGGCTTCCACTTCCAGAGTAATAGTCTTTCCCGTAAGTGTCTTAACAAA 161 Query 283091 TATCTGCATT 283100 || |||||| Sbjct 160 AATTTGCATT 151 >seq5570 Length=4331 Score = 109 bits (120), Expect = 1e-18 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 282971 CAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATC 283030 |||||| || ||||| ||| ||||| ||||||||||| || || || || || | || Sbjct 4280 CAAACGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTC 4221 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || ||||| ||||| |||||||| ||||| || ||||| || || ||||| Sbjct 4220 AATTGTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTTTTTACGAA 4161 Query 283091 TATCTGCATTTTC 283103 |||||||| ||| Sbjct 4160 GATCTGCATATTC 4148 >seq43004 Length=377 Score = 107 bits (118), Expect = 4e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 282974 ACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGAT 283033 ||| || ||||| |||||| ||||| |||||||| || || || || ||| | || || Sbjct 295 ACGCTGCTGGTCTGGCGGAATCCCCTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAAT 236 Query 283034 AGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATAT 283093 || ||||| || || || ||||||||||| ||||| || ||||| ||||||||||| || Sbjct 235 CGTATCCGATGCCTCAACCTCGAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAAAAT 176 Query 283094 CTGCATT 283100 |||||| Sbjct 175 TTGCATT 169 >seq9496 Length=2859 Score = 102 bits (112), Expect = 2e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 282971 CAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATC 283030 |||||| ||||| || |||||| |||||||| ||||| ||||| || || || | || Sbjct 1508 CAAACGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTC 1449 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || || || ||||| || || || ||||| || ||||||||||| || || Sbjct 1448 AATCGTGTCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTCAAAGTCTTGACAAA 1389 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 1388 AATCTGCAT 1380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045952007635184