Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq8547 143 3e-29 seq57627 100 3e-16 seq8871 82.4 8e-11 >seq8547 Length=3126 Score = 143 bits (158), Expect = 3e-29 Identities = 178/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487 |||||||| |||||| ||| |||||||| ||||| ||| | | | ||| || Sbjct 356 TTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTA 297 Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547 || |||| || || | || ||| |||||||| | ||| || |||||||| | | ||| Sbjct 296 TTCAAATGCTGGAAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATT 237 Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607 ||||||||| ||| | ||| ||||| | || ||||| || | |||||| |||||| Sbjct 236 AATTCATTACTTTGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCA 177 Query 23608 GCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCA 23667 ||||| ||| || ||||| ||||||||||| || ||||| || | |||||| |||| Sbjct 176 GCAAAACTTCCAGAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCA 117 Query 23668 AATG 23671 |||| Sbjct 116 AATG 113 >seq57627 Length=208 Score = 100 bits (110), Expect = 3e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 |||| | ||||| |||||||||| | ||||||||| |||||||||||||||||||| Sbjct 171 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 112 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATC 23876 ||| ||||| ||||||||||| | ||| || | | |||||| || Sbjct 111 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTC 67 >seq8871 Length=3036 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 139438 CATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCTAACATGGAC 139497 |||| ||| ||||||||||||| ||| ||||| | ||| | || |||||| ||||| Sbjct 1456 CATAGCAAACTTTGGATTGTTGACAATCAACATTTCTATTTAGGTTCTGCTAATATGGAT 1515 Query 139498 TGGCGATCACTAACTCAAGTAAAAGAATTAGGTAT 139532 |||| |||| ||||| |||| |||||||| || || Sbjct 1516 TGGCAATCATTAACTGAAGTTAAAGAATTGGGAAT 1550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521105384254400