Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq50049 86.0 5e-12 seq7417 86.0 5e-12 >seq50049 Length=284 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 44203 AAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA 44262 ||||| ||| || |||||||| | ||| | ||||| || ||| ||||| ||| | Sbjct 87 AAAGACCAATCGTTGCTGATCAGGAGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTGAC 146 Query 44263 TGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTT 44322 || | ||||| || | | |||||| || | || || |||||||||||||||||||| Sbjct 147 GTTTTCAATGGTATCAGAAGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTT 206 Query 44323 CACGAAGATTTGCAT 44337 ||| ||||| ||||| Sbjct 207 CACAAAGATCTGCAT 221 >seq7417 Length=3511 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 44098 TTTTTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGAT 44157 || ||| ||| ||| || | || | ||| |||| |||||||||| |||||||||||| Sbjct 3319 TTCTTAGTTCTCTCCTCCGCGAAGACGCAAGACCAAGTGAAGCGTGGACTCCTTTTGGAT 3378 Query 44158 GTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209 |||||| || ||||| ||| | || || |||||||| || ||||||||| Sbjct 3379 GTTGTAGTCAGCGAGAGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAGATC 3430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359732878167432