Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq49882 118 3e-21 seq50049 114 3e-20 seq4398 91.5 4e-13 seq3111 86.0 2e-11 seq43004 84.2 5e-11 >seq49882 Length=286 Score = 118 bits (130), Expect = 3e-21 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| ||||| || |||||||| || |||||| || || Sbjct 67 CAGATCTTTGTGAAGACCCTCACGGGAAAGACAATCACCCTAGAAGTGGAAGCGTCTGAT 126 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||||||||||||||||||||| ||||| || |||||| Sbjct 127 ACCATTGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTCCTGATCAGCAA 186 Query 178044 CGA 178046 ||| Sbjct 187 CGA 189 >seq50049 Length=284 Score = 114 bits (126), Expect = 3e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| ||||| || ||||| || || |||||| || || Sbjct 218 CAGATCTTTGTGAAGACCCTCACGGGAAAGACAATCACTCTAGAAGTGGAAGCTTCTGAT 159 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||||||||||||||||||||||||||| || |||||| Sbjct 158 ACCATTGAAAACGTCAAGGCCAAGATTCAGGACAAAGAAGGAATCCCTCCTGATCAGCAA 99 Query 178044 CGACTTATCTT 178054 ||| | |||| Sbjct 98 CGATTGGTCTT 88 >seq4398 Length=5060 Score = 91.5 bits (100), Expect = 4e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || |||||||||||||| || || || || || || Sbjct 4618 CAGATCTTCGTAAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCTTCTGAT 4677 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||| ||||| ||||| ||||| || ||||| || ||||| Sbjct 4678 ACCATCGAAAACGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCTGATCAGCAG 4737 Query 178044 CGA 178046 ||| Sbjct 4738 CGA 4740 >seq3111 Length=6167 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||||||| | || || || || ||||||||||| || || || ||| Sbjct 6163 CAAATCTTCGTGAAAACTTTGACTGGGAAGACTATCACCCTCGAAGTTGAGGCATCTGAC 6104 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| || ||||||||||| ||||| || || || || ||||| Sbjct 6103 ACTATAGAAAATGTCAAGGCCAAAATTCAGGACAAGGAAGGCATTCCACCAGATCAGCAG 6044 Query 178044 CGACT 178048 || || Sbjct 6043 CGTCT 6039 >seq43004 Length=377 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | ||||| || || ||||| |||||||| || || || Sbjct 173 CAAATTTTCGTTAAGACGTTGACAGGCAAGACTATCACTCTCGAGGTTGAGGCATCGGAT 232 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| || ||||| |||||||| || || || || |||||||| Sbjct 233 ACGATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAGGGGATTCCGCCAGACCAGCAG 292 Query 178044 CGACTT 178049 || ||| Sbjct 293 CGTCTT 298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202825942979024