Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1983 96.9 4e-15 >seq1983 Length=15124 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 54779 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 54838 |||||||||||||| || |||||||| || || ||||| || || || | |||||||| Sbjct 8086 TTTTTTGTTTCTTTATGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAGAGCATAATCT 8027 Query 54839 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTT 54898 || || ||||||| | ||||| | ||| |||| || | | ||||| || || ||| Sbjct 8026 GGGTGCACTGTAGTATTTGAAGCTGCCACTTCAGCTGCCAAATTATCCAACTCAACAGTT 7967 Query 54899 GTTACTCCATTATATATTCCT 54919 |||||||| |||| || ||| Sbjct 7966 GTTACTCCTGTATAAATGCCT 7946 Score = 96.9 bits (106), Expect = 4e-15 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 54503 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562 || ||||| || ||| ||||| || || |||||||||||||| ||||| || || ||| Sbjct 8475 TCAATATCAGTTTTATGTATTCCAACAGCAACACGCATTAACATATGCTGTGGCCTCTCA 8416 Query 54563 ACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 54622 || | || || ||| || | ||| || ||| | |||||||| |||||||| Sbjct 8415 ACTACTTTTCCATTAATTCGCAAAAGGTAAGAGCGTTCAAGTGTTTTAAAGCCAAAATAA 8356 Query 54623 TTGTA-TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTT 54666 |||| |||||| || || || |||||||| ||||| |||||||| Sbjct 8355 GTGTAGTGAAAA-TCACGATCATAAATAATTACTGAATTGAGTTT 8312 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 52838 GTACGTAGATAGTACATTCCCGTTTTTA--GACCGAGACTCCATCCGTAAAAATGCATAC 52895 ||||| | |||||||||||| ||||| | |||| ||| | | |||||||| Sbjct 11414 GTACGCAAATAGTACATTCCAGTTTTGATGGACCATTTTCCCAAGCAAAGAAATGCATTG 11355 Query 52896 TTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 52955 || | ||| | ||| | ||||| || ||||| | ||| | ||||||||||||||| | Sbjct 11354 AAGTAATTTTTGCATAGGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGATCAA 11295 Query 52956 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAG 53015 | || | | | |||| |||||| || ||||| ||||||||||||||||| || Sbjct 11294 TAAAAGGAGCTCGGTCTATAGCCATATTGATGATTTCACGTTGTGGAATTTCCCAAACAG 11235 Query 53016 TTTTATA 53022 |||| || Sbjct 11234 TTTTGTA 11228 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/288 (67%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 54178 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 54237 ||| || ||||| ||||| || || | || |||| ||||| ||||| || || Sbjct 9153 TTTATTCCCTCCTTGATCAATATAACGTGCCACAGAATTAAAAACTTGTAACATCGGTAT 9094 Query 54238 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 54297 ||| ||||| || ||||| || || || || | ||| |||||||| | Sbjct 9093 AATTCCATTAGAATTTCCATTTGTGCCAGATATCAAAGAACCAGCAGCACGAATTGAATG 9034 Query 54298 AATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 54357 ||| || || || || || || ||| ||| || || |||| || || || | || || Sbjct 9033 AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATATGCACAACGATTAATTGTTTC 8974 Query 54358 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 54417 | | || || || || ||| | | ||| ||||| |||||| ||| | ||| | Sbjct 8973 AAAAATTCCTTCAATTGAGTCACCAACCATTGAAAGTAAAAAACAAGAAGAAAGTTGTGG 8914 Query 54418 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 54465 ||| | || |||||||| ||||| || ||||||||||| || ||||| Sbjct 8913 ACGTTTTGTACCCGCATTGAATAAAGTTGGAGAAGCGTGAGTGAACCA 8866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593695995756000