Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2855 86.0 7e-12 >seq2855 Length=35860 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 42999 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 43058 ||||||||||| ||||||| || || | || || | |||||| || ||||| ||||| Sbjct 31833 TGAATATTGTAGTCAGCCAACGTTCGACCATCCTCCAACTGCTTCCCGGCGAAGATGAGG 31892 Query 43059 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 43118 || ||||| || | || | | |||||| ||| ||| || |||| || | | Sbjct 31893 CGTTGCTGCTCTGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 31952 Query 43119 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATT 43178 ||||| | |||||||| | ||||| || || || || ||||| || ||||||| | Sbjct 31953 GTGTCCGACTGCTCCACATCCAGAGTGATCGTCTTCCCGGTGAGCGTTTTGACAAAGACT 32012 Query 43179 TGCAT 43183 ||||| Sbjct 32013 TGCAT 32017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571792940366000