Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1894 107 2e-18 >seq1894 Length=37626 Score = 107 bits (118), Expect = 2e-18 Identities = 96/119 (81%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 16498 ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGC 16557 |||| |||||||||||| |||| | |||||||||||||||||||||||| || || Sbjct 17877 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTCTCAATGGC 17818 Query 16558 TATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTT-CAGAGTAAAACCTT 16615 ||| ||||| |||||||| || | |||||| | |||||| |||| | ||| ||||| || Sbjct 17817 TATTTGAAAGCCATAAAAACAACGAGCTTCTGGTATTTGCACTTCCTGAGCAAAACGTT 17759 Score = 82.4 bits (90), Expect = 7e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 || |||| || | || |||||||||||| | ||| | ||||| || | | ||||| Sbjct 18197 AAATGTTGGAAAAGTAAACAAGCAAAATCCCGATGAAGACCTTCATCACGAGAAATTAAT 18138 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 || || ||| | || ||||| || || ||||| || | |||||| || || ||| Sbjct 18137 TCATTACTTTGTGTCAATCCAGGCATAAGACCACGTTTCTTCAACCAAAAAATTGCAGCA 18078 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAA 16379 || ||||| || ||||| |||||||||| |||||||||| Sbjct 18077 AAACTTCCAGAGAAAAATATTCCTTCAACTGAAGCAAATGCAA 18035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462492054170000