Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1983 96.9 3e-15 seq1894 96.9 3e-15 >seq1983 Length=15124 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 37335 CATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCC 37394 ||||||| ||||||||| || || |||||||| | ||||| || ||||| ||||| Sbjct 10822 CATATCAAATTGTAGAAAGCCCTTTTCAACTGGAGAACCTTTATAAGTTTCATATGGTCC 10763 Query 37395 GTAAATTTTA--GCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAA 37452 ||||| | || | ||||||| || || | || |||| ||||||||||| ||| Sbjct 10762 --AAATTGTTCGGCCAATTCGCAAGAAGCCTCCAACGCACCATAGTATATTGTTTCAAAA 10705 Query 37453 ATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAAC 37512 || ||| | ||||| ||| |||| ||||| | || | | | | || || ||||| Sbjct 10704 ATCTGTTTGTTTAACTCTTTGGCTTGATCGCTTACAAAAGGAAAACGCATCAAAATAAAA 10645 Query 37513 ACATCAGCCAAACCCTGAA 37531 |||||||||| |||| || Sbjct 10644 GCATCAGCCAACCCCTTAA 10626 >seq1894 Length=37626 Score = 96.9 bits (106), Expect = 3e-15 Identities = 267/412 (65%), Gaps = 42/412 (10%) Strand=Plus/Minus Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGT 11671 ||||||| || | |||||| |||||||| | ||| | |||||| || | | |||| | Sbjct 18197 AAATGTTGGAAAAGTAAACAAGCAAAATCCCGATGAAGACCTTCATCACGAGAAATTAAT 18138 Query 11672 TCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA 11731 |||||| ||| ||||| ||||| | || ||||| || | |||||| || |||||| Sbjct 18137 TCATTACTTTGTGTCAATCCAGGCATAAGACCACGTTTCTTCAACCAAAAAATTGCAGCA 18078 Query 11732 AATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT 11791 || ||||| || |||||||| || || | |||||||| | | | ||||||| || Sbjct 18077 AAACTTCCAGAGAAAAATATTCCTTCAACTGAAGCAAATGCAATAAGACGTTCTCCAAAT 18018 Query 11792 --ACCTTGTTG-CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCC 11848 | ||| || || | |||| ||||||||||| || || || | | || Sbjct 18017 GAAGCTTCTTTACTGGCAGTCCAACGAAGAGCCCAATCAGCCTTTTTCTTGATAAAGTCA 17958 Query 11849 ATTGTTTCTATAGCGTTAAATAAA--TGCATT--------------TTTTCTA------- 11885 | | ||||||||| || || |||| | ||| || Sbjct 17957 AATTCAAATATAGCGTTGAACAATCTTGCACTGAAAAAGAAAATTATTTAATAATTAAAA 17898 Query 11886 ------TA--------TT--ATCTCTTACATATGTATCTATTAATAAACTATACATTTCT 11929 || || |||| | | ||| ||||| |||||| |||||||||| Sbjct 17897 AAAGAGTACCGTTCAGTTGAATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCT 17838 Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 ||||||||||| || || ||||||||||| ||||| ||||| || || |||| Sbjct 17837 GAATGAATATTCTCAATGGCTATTTGAAAGCCATAAAAACAACGAGCTTCTG 17786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468504594868000