Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1983 105 1e-17 >seq1983 Length=15124 Score = 105 bits (116), Expect = 1e-17 Identities = 124/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 80413 TCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCA 80472 || ||||| || ||| ||||| || || |||||||||||||| ||||| || || ||| Sbjct 8475 TCAATATCAGTTTTATGTATTCCAACAGCAACACGCATTAACATATGCTGTGGCCTCTCA 8416 Query 80473 ACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAG 80532 || | || ||| ||| ||| | |||||| ||| | |||||||| |||||||| Sbjct 8415 ACTACTTTTCCATTAATTCGCAAAAGGTAAGAGCGTTCAAGTGTTTTAAAGCCAAAATAA 8356 Query 80533 TTGTA-TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 80576 |||| |||||| || || || |||||||| || || |||||||| Sbjct 8355 GTGTAGTGAAAA-TCACGATCATAAATAATTACTGAATTGAGTTT 8312 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 80689 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCT 80748 ||||||||||| || || |||||||| || || |||||||| || | | ||||||||| Sbjct 8086 TTTTTTGTTTCTTTATGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAGAGCATAATCT 8027 Query 80749 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 80808 || || ||||||| | ||||| | ||| ||||||| | | ||||| || || ||| Sbjct 8026 GGGTGCACTGTAGTATTTGAAGCTGCCACTTCAGCTGCCAAATTATCCAACTCAACAGTT 7967 Query 80809 GTTACTCCATTATATATTCCT 80829 |||||||| |||| || ||| Sbjct 7966 GTTACTCCTGTATAAATGCCT 7946 Score = 102 bits (112), Expect = 1e-16 Identities = 211/314 (67%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 80088 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 80147 ||| || ||||| ||||| || || | || |||| ||||| ||||| || || Sbjct 9153 TTTATTCCCTCCTTGATCAATATAACGTGCCACAGAATTAAAAACTTGTAACATCGGTAT 9094 Query 80148 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 80207 ||| ||||| || | ||||| || || || || | ||| |||||||| | Sbjct 9093 AATTCCATTAGAATTTCCATTTGTGCCAGATATCAAAGAACCAGCAGCACGAATTGAATG 9034 Query 80208 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 80267 ||| || || || ||||| || ||| ||| || || |||| || || || | || || Sbjct 9033 AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATATGCACAACGATTAATTGTTTC 8974 Query 80268 ATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 80327 | | || || || || ||| ||| ||| ||||| |||||| ||| | ||| | Sbjct 8973 AAAAATTCCTTCAATTGAGTCACCAACCATTGAAAGTAAAAAACAAGAAGAAAGTTGTGG 8914 Query 80328 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAG 80387 ||| | || |||||||| ||||| || ||||||||||| || ||||| || || Sbjct 8913 ACGTTTTGTACCCGCATTGAATAAAGTTGGAGAAGCGTGAGTGAACCAACGCTCGCCCAT 8854 Query 80388 TAGATTGTACGTCT 80401 |||||||| |||| Sbjct 8853 GAGATTGTAAGTCT 8840 Score = 96.9 bits (106), Expect = 5e-15 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 78748 GTACGTAGATAGTACATTCCCGTTTTTA--GACCGAGACTCCATCCGTAGAAATGCATAC 78805 ||||| | |||||||||||| ||||| | |||| ||| | |||||||||| Sbjct 11414 GTACGCAAATAGTACATTCCAGTTTTGATGGACCATTTTCCCAAGCAAAGAAATGCATTG 11355 Query 78806 TCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 78865 || | ||| | ||| | ||||| || ||||| | ||| | ||||||||||||||| | Sbjct 11354 AAGTAATTTTTGCATAGGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGATCAA 11295 Query 78866 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAG 78925 | || | | | |||| |||||| || ||||| ||||||||||||||||| || Sbjct 11294 TAAAAGGAGCTCGGTCTATAGCCATATTGATGATTTCACGTTGTGGAATTTCCCAAACAG 11235 Query 78926 TTTTATA 78932 |||| || Sbjct 11234 TTTTGTA 11228 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 || || || | ||||||| ||| || || ||||||||||| ||||||||| || ||| Sbjct 9932 TCAAATTCCTTTCCCCAACAATCATCCAAGTTAGGACATTCGTTAGGACACATTAAAGAC 9873 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAA 79952 || || ||||||||| | |||||||||||||| Sbjct 9872 CAATCACCATCATCCCTCACTCGTTTCATAAA 9841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718237824658000