Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1894 134 1e-26 >seq1894 Length=37626 Score = 134 bits (148), Expect = 1e-26 Identities = 211/302 (70%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 13791 TTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATAT 13850 ||||| ||| ||||||||||| || || | |||| ||| || || | Sbjct 18260 TTTTCGATATCAACAGCCTCTTTAATTATTTCTTCAATACGTTCAATACTCGGTTTGTTA 18201 Query 13851 TTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATA 13910 || | ||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| Sbjct 18200 TTCAAATGTTGGAAAAGTAAACAAGCAAAATCCCGATGAAGACCTTCATCACGAGAAATT 18141 Query 13911 AGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13970 | ||| || ||| ||||| ||||| | || ||||| || |||||||| |||||| Sbjct 18140 AATTCATTACTTTGTGTCAATCCAGGCATAAGACCACGTTTCTTCAACCAAAAAATTGCA 18081 Query 13971 GCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCA 14030 ||||| || || || |||||||| ||||||| |||||| || || | ||||||||| Sbjct 18080 GCAAAACTTCCAGAGAAAAATATTCCTTCAACTGAAGCAAATGCAATAAGACGTTCTCCA 18021 Query 14031 AACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAA 14090 || || |||| ||| | | |||| |||||| |||| ||||| || ||||| Sbjct 18020 AATGAAGCTTCTTTACTGGCAGTCCAACGAAGAGCCCAATCAGCCTTTTTCTTGATAAAG 17961 Query 14091 TC 14092 || Sbjct 17960 TC 17959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479707311730000