Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1894 140 3e-28 >seq1894 Length=37626 Score = 140 bits (154), Expect = 3e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 ||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | ||| Sbjct 18195 ATGTTGGAAAAGTAAACAAGCAAAATCCCGATGAAGACCTTCATCACGAGAAATTAATTC 18136 Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763 || ||| ||||| ||||| | || ||||| || |||||||| |||||||| || Sbjct 18135 ATTACTTTGTGTCAATCCAGGCATAAGACCACGTTTCTTCAACCAAAAAATTGCAGCAAA 18076 Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 ||| || || |||||||| ||||||| |||||| || || || ||||||||||| || Sbjct 18075 ACTTCCAGAGAAAAATATTCCTTCAACTGAAGCAAATGCAATAAGACGTTCTCCAAATGA 18016 Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 13880 |||| ||| | | |||| |||||| |||| ||||| || ||||| || Sbjct 18015 AGCTTCTTTACTGGCAGTCCAACGAAGAGCCCAATCAGCCTTTTTCTTGATAAAGTC 17959 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 |||||||| || || ||||||||| |||| | || |||||||||||||| || || Sbjct 18826 GAAATAACTCCAGCCTTCTGATATTCAGAAACTTTCTTCTCAAAAAAGTTAGTCTTTCCC 18767 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 || | || ||||| |||||||||||||| |||||| Sbjct 18766 TCAATAGAAATATTCTCCATAAAATCGAAAGGATTT 18731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478568160858000