Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1983 114 2e-20 >seq1983 Length=15124 Score = 114 bits (126), Expect = 2e-20 Identities = 126/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 72496 TCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 || ||||| || ||||||||| || || |||||||||||||||||||| || || ||| Sbjct 8475 TCAATATCAGTTTTATGTATTCCAACAGCAACACGCATTAACATATGCTGTGGCCTCTCA 8416 Query 72556 ACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 72615 || | || ||| ||| ||| | ||| || ||| | |||||||| |||||||| Sbjct 8415 ACTACTTTTCCATTAATTCGCAAAAGGTAAGAGCGTTCAAGTGTTTTAAAGCCAAAATAA 8356 Query 72616 TTGTA-TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTT 72659 |||| |||||| || || || |||||||| || ||||||||||| Sbjct 8355 GTGTAGTGAAAA-TCACGATCATAAATAATTACTGAATTGAGTTT 8312 Score = 105 bits (116), Expect = 9e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 72772 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCT 72831 ||||||||||| || || |||||||| || || |||||||| || || | ||||||||| Sbjct 8086 TTTTTTGTTTCTTTATGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAGAGCATAATCT 8027 Query 72832 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891 || || ||||||| | ||||| | ||| ||||||| | | ||||| || || ||| Sbjct 8026 GGGTGCACTGTAGTATTTGAAGCTGCCACTTCAGCTGCCAAATTATCCAACTCAACAGTT 7967 Query 72892 GTTACTCCATTATATATTCCT 72912 |||||||| |||| || ||| Sbjct 7966 GTTACTCCTGTATAAATGCCT 7946 Score = 91.5 bits (100), Expect = 2e-13 Identities = 211/316 (67%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 72171 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 72230 ||| || ||||| ||||| || || | || |||| ||||| ||||| || || Sbjct 9153 TTTATTCCCTCCTTGATCAATATAACGTGCCACAGAATTAAAAACTTGTAACATCGGTAT 9094 Query 72231 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTG 72288 ||| ||||| || ||||| || || || || | ||| |||||||| | || Sbjct 9093 AATTCCATTAGAATTTCCATTTGTGCCAGATATCAAAGAACCAGCAGCACGAATTGAATG 9034 Query 72289 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 72348 ||| || || || ||||| || ||| ||| || || |||| || || || | || Sbjct 9033 --AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATATGCACAACGATTAATTGTT 8976 Query 72349 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 72408 ||| | || || || || ||| | | ||| ||||| |||||| ||| | ||| Sbjct 8975 TCAAAAATTCCTTCAATTGAGTCACCAACCATTGAAAGTAAAAAACAAGAAGAAAGTTGT 8916 Query 72409 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 72468 |||| | || |||||||| ||||| || ||||||||||| || ||||| || | Sbjct 8915 GGACGTTTTGTACCCGCATTGAATAAAGTTGGAGAAGCGTGAGTGAACCAACGCTCGCCC 8856 Query 72469 AGTAGATTGTACGTCT 72484 | |||||||| |||| Sbjct 8855 ATGAGATTGTAAGTCT 8840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671110257122000