Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1894 95.1 1e-14 >seq1894 Length=37626 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/109 (80%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||||||||| || ||| ||||||||||||||||||||| || || |||||||| Sbjct 17871 AATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTCTCAATGGCTATTTG 17812 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTT-CGGAGTAAAA 13527 || ||||||||||| | ||| |||| || || |||| | ||| |||| Sbjct 17811 AAAGCCATAAAAACAACGAGCTTCTGGTATTTGCACTTCCTGAGCAAAA 17763 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 13070 TTTTCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTT 13129 ||||| |||||||| || || ||| ||| ||| | | ||||||| || | | | | | Sbjct 18260 TTTTCGATATCAACAGCCTCTTTAATTATTTCT-TCAATACGTTCAATACTCG-GTTTGT 18203 Query 13130 GAT--AGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTA 13187 || | ||| | || | | ||| |||||||| | || | |||||||| | | | Sbjct 18202 TATTCAAATGTTGGAAAAGTAAACAAGCAAAATCCCGATGAAGACCTTCATCACGAGAAA 18143 Query 13188 TTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAG 13247 ||| || || ||| | || |||||||| || ||||| || | |||||| || | Sbjct 18142 TTAATTCATTACTTTGTGTCAATCCAGGCATAAGACCACGTTTCTTCAACCAAAAAATTG 18083 Query 13248 CAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCAC 13307 ||||||| || || ||||||||||||||||||| ||||| || || | | ||| | Sbjct 18082 CAGCAAAACTTCCAGAGAAAAATATTCCTTCAACTGAAGCAAATGCAATAAGACGTTCTC 18023 Query 13308 CA 13309 || Sbjct 18022 CA 18021 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 || |||||||| |||| | || ||||||||||| || ||||| || | |||||||| Sbjct 18811 TTCTGATATTCAGAAACTTTCTTCTCAAAAAAGTTAGTCTTTCCCTCAATAGAAATATTC 18752 Query 12920 TCCATAAAATCGAAAGGATTT 12940 ||||||||||||||||||||| Sbjct 18751 TCCATAAAATCGAAAGGATTT 18731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430964278536900