Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1807 93.3 1e-13 seq2860 86.0 1e-11 >seq1807 Length=32432 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 |||||||||||| || || || || ||||| ||||| || || || |||||||| | || Sbjct 21102 CTGTTGATCAGGCGGGATGCCCTCCTTATCTTGAATTTTGGCCTTAACATTTTCAATAGT 21043 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || || || ||||||||||| || || || || || || ||||| ||||| Sbjct 21042 ATCAGAAGCCTCAACTTCGAGTGTAATAGTTTTTCCGGTGAGAGTCTTGACAAAAATCTG 20983 Query 104557 CATTTT 104562 ||| || Sbjct 20982 CATATT 20977 >seq2860 Length=84313 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || |||||||| || ||||||||||| || |||||||| || || || || || | ||| Sbjct 78130 TGCTGATCAGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTAACGTTCTCAATGGTG 78189 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 ||| || || || || || || || || || |||||||| || || || || |||||| Sbjct 78190 TCGGAAGACTCAACTTCGAGCGTGATGGTTTTCCCAGTAAGCGTCTTGACGAAAATCTGC 78249 Query 104558 AT 104559 || Sbjct 78250 AT 78251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151347504592600