Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq2460 84.2 3e-11 >seq2460 Length=57425 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 6816 TTTTATAGCTTTTATATGATCTA-AATAAATATGAGCATCTCCTAGCGTATGAATAAATT 6874 ||||| ||||| |||||| | || |||||||||| ||||| || || ||||||||||||| Sbjct 47580 TTTTAAAGCTTCTATATG-TGTAGAATAAATATGTGCATCACCAAGTGTATGAATAAATT 47522 Query 6875 CACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTA 6934 |||| | ||| | | | |||||||| | || || | ||||| |||| |||| Sbjct 47521 CACCAGCTTTAAGTCCGGTTACATGAGCAATCATATGGGTAAGTAATGAATAACTGGCTA 47462 Query 6935 CATTAAAAGGTACACCTAATCCC 6957 ||| || || || ||||| ||| Sbjct 47461 TATTGAAGGGGACGCCTAAACCC 47439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595846303020000