Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3100 129 9e-26 seq3101 127 3e-25 seq2839 91.5 2e-14 >seq3100 Length=33167 Score = 129 bits (142), Expect = 9e-26 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | |||||| ||||||||||||||||| || ||||| || || Sbjct 10559 CGCCAAGCGTCACCGAAAAGTTCTTCGTGATAACATCCAAGGAATTACAAAGCCGGCAAT 10618 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||| ||||||||||| || || ||| | ||||| | | ||||| |||| Sbjct 10619 CCGTCGTTTGGCCCGTCGTGGTGGTGTGAAACGTATTTCTGGTCTCATTTATGAGGAGAC 10678 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| ||||| ||||||| Sbjct 10679 TCGAGGTGTTCTGAAGGTCTTCCT 10702 >seq3101 Length=86412 Score = 127 bits (140), Expect = 3e-25 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | |||||| ||||||||||||||||| || ||||| || || Sbjct 17469 CGCCAAGCGTCACCGAAAAGTTCTTCGTGATAACATCCAAGGAATTACAAAGCCGGCAAT 17410 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||| ||||||||||| || || ||| | ||||| | | || || |||| Sbjct 17409 CCGTCGTTTGGCCCGTCGTGGTGGTGTGAAACGTATTTCTGGTCTCATTTACGAGGAGAC 17350 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC 16596 ||| | |||| ||||| ||||||| | | || |||| ||| || Sbjct 17349 TCGAGGTGTTCTGAAGGTCTTCCTTGAAAATGTGATCCGTGACGC 17305 >seq2839 Length=44378 Score = 91.5 bits (100), Expect = 2e-14 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | | | || || |||||||||||||| || ||||| || || Sbjct 11161 CGCCAAGCGCCACCGAAAAGTTTTACGTGACAACATCCAAGGAATTACAAAGCCGGCAAT 11102 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||| ||||||||||| || || || | || || | | || || |||| Sbjct 11101 CCGTCGTTTGGCCCGTCGTGGTGGTGTGAAACGAATTTCCGGGCTCATTTACGAGGAGAC 11042 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC 16596 ||| | || ||||| ||||||| | | || |||| ||| || Sbjct 11041 TCGAGGCGTGCTGAAGGTCTTCCTTGAAAATGTGATCCGTGACGC 10997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072045640850