Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1983 102 1e-16 >seq1983 Length=15124 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 63966 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCC 64025 ||||||||||| || || |||||||| || || |||||||| || || | |||||||| Sbjct 8086 TTTTTTGTTTCTTTATGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAGAGCATAATCT 8027 Query 64026 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64085 || || ||||||| | ||||| | ||| ||||||| | | ||||| || || ||| Sbjct 8026 GGGTGCACTGTAGTATTTGAAGCTGCCACTTCAGCTGCCAAATTATCCAACTCAACAGTT 7967 Query 64086 GTTACTCCATTATATATTCCT 64106 |||||||| |||| || ||| Sbjct 7966 GTTACTCCTGTATAAATGCCT 7946 Score = 96.9 bits (106), Expect = 4e-15 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 63690 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63749 || ||||| || ||| ||||| || || |||||||||||||| ||||| || || ||| Sbjct 8475 TCAATATCAGTTTTATGTATTCCAACAGCAACACGCATTAACATATGCTGTGGCCTCTCA 8416 Query 63750 ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63809 || | || || ||| ||| | ||| || ||| | |||||||| |||||||| Sbjct 8415 ACTACTTTTCCATTAATTCGCAAAAGGTAAGAGCGTTCAAGTGTTTTAAAGCCAAAATAA 8356 Query 63810 TTGTA-TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63853 |||| |||||| || || || |||||||| || || |||||||| Sbjct 8355 GTGTAGTGAAAA-TCACGATCATAAATAATTACTGAATTGAGTTT 8312 Score = 91.5 bits (100), Expect = 2e-13 Identities = 193/288 (67%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 63365 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63424 ||| || ||||| ||||| || || | || |||| ||||| ||||| || || Sbjct 9153 TTTATTCCCTCCTTGATCAATATAACGTGCCACAGAATTAAAAACTTGTAACATCGGTAT 9094 Query 63425 AATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACT 63484 ||| || || || | ||||| || || || || | ||| |||||||| | Sbjct 9093 AATTCCATTAGAATTTCCATTTGTGCCAGATATCAAAGAACCAGCAGCACGAATTGAATG 9034 Query 63485 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544 ||| || || || ||||| || ||| ||| || || |||| || || || | || || Sbjct 9033 AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATATGCACAACGATTAATTGTTTC 8974 Query 63545 ATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63604 | | || || || || ||| | | ||| ||||| |||||| ||| | ||| | Sbjct 8973 AAAAATTCCTTCAATTGAGTCACCAACCATTGAAAGTAAAAAACAAGAAGAAAGTTGTGG 8914 Query 63605 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 ||| | || |||||||| ||||| || ||||||||||| || ||||| Sbjct 8913 ACGTTTTGTACCCGCATTGAATAAAGTTGGAGAAGCGTGAGTGAACCA 8866 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTA--GACCGAGACTCCATCCGTAAAAATGCATAC 62082 ||||| | |||||||||||| ||||| | |||| ||| | | |||||||| Sbjct 11414 GTACGCAAATAGTACATTCCAGTTTTGATGGACCATTTTCCCAAGCAAAGAAATGCATTG 11355 Query 62083 TCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 62142 || | ||| | ||| | ||||| || ||||| | ||| | ||||||||||||||| | Sbjct 11354 AAGTAATTTTTGCATAGGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGATCAA 11295 Query 62143 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAG 62202 | || | | | |||| |||||| || ||||| ||||||||||||||||| || Sbjct 11294 TAAAAGGAGCTCGGTCTATAGCCATATTGATGATTTCACGTTGTGGAATTTCCCAAACAG 11235 Query 62203 TTTTATA 62209 |||| || Sbjct 11234 TTTTGTA 11228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622920335402000