Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq339 131 1e-25 seq3147 109 4e-19 seq3063 109 4e-19 seq2736 109 4e-19 seq1045 109 4e-19 seq260 109 4e-19 seq2737 95.1 8e-15 seq2319 95.1 8e-15 seq1203 95.1 8e-15 seq803 95.1 8e-15 seq280 95.1 8e-15 seq38 95.1 8e-15 seq354 93.3 3e-14 seq3103 91.5 1e-13 >seq339 Length=3656 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 2535 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 2476 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2475 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2441 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||| |||| |||||||||||||||||||||||| | Sbjct 542 CTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTC 483 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 482 GCCCGTATTTAGCCTT 467 >seq3147 Length=42808 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1449 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1508 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||| |||||||| || |||| ||||| Sbjct 1509 TGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGA 1543 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| ||||||||| |||| ||||||||| |||||||| |||| Sbjct 3681 CTCTCTCTTCAAAGTGCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGGACTCGT 3740 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||| || |||| Sbjct 3741 GGCAATATTAAGTCTTA 3757 >seq3063 Length=44068 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 851 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 792 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||| |||||||| || |||| ||||| Sbjct 791 TGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGA 757 >seq2736 Length=14981 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 12406 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 12465 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||| |||||||| || |||| ||||| Sbjct 12466 TGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGA 12500 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| ||||||||| |||| ||||||||| |||||||| |||| Sbjct 14634 CTCTCTCTTCAAAGTGCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGGACTCGT 14693 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||| || |||| Sbjct 14694 GGCAATATTAAGTCTTA 14710 >seq1045 Length=14645 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 12944 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 13003 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||| |||||||| || |||| ||||| Sbjct 13004 TGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGA 13038 >seq260 Length=2701 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2422 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2363 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||| |||||||| || |||| ||||| Sbjct 2362 TGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGA 2328 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| ||||||||| |||| ||||||||| |||||||| |||| Sbjct 190 CTCTCTCTTCAAAGTGCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGGACTCGT 131 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||| || |||| Sbjct 130 GGCAATATTAAGTCTTA 114 >seq2737 Length=44827 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| ||||||||| |||| ||||||||| |||||||| |||| Sbjct 28286 CTCTCTCTTCAAAGTGCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGGACTCGT 28227 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||| || |||| Sbjct 28226 GGCAATATTAAGTCTTA 28210 >seq2319 Length=17570 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| ||||||||| |||| ||||||||| |||||||| |||| Sbjct 3275 CTCTCTCTTCAAAGTGCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGGACTCGT 3334 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||| || |||| Sbjct 3335 GGCAATATTAAGTCTTA 3351 Score = 87.8 bits (96), Expect = 1e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTG-TTCGCTATCGGTCTCG 20005 ||||||||||||||| |||| ||||||||| |||| ||||||| || |||||||| |||| Sbjct 1203 CTCTCTCTTCAAAGTGCTTTGCAACTTTCCTTCACAGTACTTGATTTGCTATCGGACTCG 1262 Query 20006 CGGTAATATTTAGCCTTA 20023 || |||||| || |||| Sbjct 1263 TGGCAATATTAAGTCTTA 1280 >seq1203 Length=18474 Score = 95.1 bits (104), Expect = 8e-15 Identities = 68/78 (87%), Gaps = 4/78 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG----GGGTAATCTCGTT 25957 ||||||||||||||||||||||||||||||||||||||||||| | | |||||||| Sbjct 98 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGATCTCGTT 39 Query 25958 AATCCTTTCATGCGCGTC 25975 |||| ||| |||||||| Sbjct 38 GATCCATTCGTGCGCGTC 21 >seq803 Length=9593 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| ||||||||| |||| ||||||||| |||||||| |||| Sbjct 8874 CTCTCTCTTCAAAGTGCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGGACTCGT 8815 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||| || |||| Sbjct 8814 GGCAATATTAAGTCTTA 8798 >seq280 Length=2846 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| ||||||||| |||| ||||||||| |||||||| |||| Sbjct 1260 CTCTCTCTTCAAAGTGCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGGACTCGT 1201 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||| || |||| Sbjct 1200 GGCAATATTAAGTCTTA 1184 >seq38 Length=2052 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| ||||||||| |||| ||||||||| |||||||| |||| Sbjct 627 CTCTCTCTTCAAAGTGCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGGACTCGT 568 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||| || |||| Sbjct 567 GGCAATATTAAGTCTTA 551 >seq354 Length=3833 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||| |||| |||||||||||||||||||||||| | Sbjct 3739 CTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTC 3680 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 3679 GCCCGTATTTAGCCTT 3664 >seq3103 Length=23508 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 || || |||||||||||| || | ||||| ||||| |||||||| || | | ||| Sbjct 8858 AATGTTAATCGTAATGTGCAAGATCCCTTCTATCGCTATAAAATGCCACGTCTTTTGGCC 8917 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 || || ||||| || ||||| || ||||| || || ||| || ||||||||| | ||| Sbjct 8918 AAAGTTGAGGGAAAAGGAAATGGAATTAAGACTGTTGTTGCTAATATGCCTGAAATTGCT 8977 Query 6294 AAGGCGCTCGGACGCCCT 6311 ||||| ||| ||| ||| Sbjct 8978 AAGGCACTCTCACGTCCT 8995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334933116516950