Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1983 100 4e-16 >seq1983 Length=15124 Score = 100 bits (110), Expect = 4e-16 Identities = 195/288 (68%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 63220 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63279 ||| || ||||| ||||| || || | || |||| ||||| ||||| || || Sbjct 9153 TTTATTCCCTCCTTGATCAATATAACGTGCCACAGAATTAAAAACTTGTAACATCGGTAT 9094 Query 63280 AATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACT 63339 ||| ||||| || | ||||| || || || || | ||| |||||||| | Sbjct 9093 AATTCCATTAGAATTTCCATTTGTGCCAGATATCAAAGAACCAGCAGCACGAATTGAATG 9034 Query 63340 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 63399 ||| || || || ||||| || ||| ||| || || |||| || || || | || || Sbjct 9033 AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATATGCACAACGATTAATTGTTTC 8974 Query 63400 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63459 | | || || || || ||| | | ||| ||||| |||||| ||| | ||| | Sbjct 8973 AAAAATTCCTTCAATTGAGTCACCAACCATTGAAAGTAAAAAACAAGAAGAAAGTTGTGG 8914 Query 63460 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCA 63507 ||| | || |||||||| ||||| || |||||||||||||| ||||| Sbjct 8913 ACGTTTTGTACCCGCATTGAATAAAGTTGGAGAAGCGTGAGTGAACCA 8866 Score = 96.9 bits (106), Expect = 4e-15 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 63545 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 || ||||| || ||| ||||| || || |||||||||||||| ||||| || || ||| Sbjct 8475 TCAATATCAGTTTTATGTATTCCAACAGCAACACGCATTAACATATGCTGTGGCCTCTCA 8416 Query 63605 ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63664 || | || || ||| ||| | ||| || ||| | |||||||| |||||||| Sbjct 8415 ACTACTTTTCCATTAATTCGCAAAAGGTAAGAGCGTTCAAGTGTTTTAAAGCCAAAATAA 8356 Query 63665 TTGTA-TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63708 |||| |||||| || || || |||||||| || || |||||||| Sbjct 8355 GTGTAGTGAAAA-TCACGATCATAAATAATTACTGAATTGAGTTT 8312 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 61880 GTACGTAGATAGTACATTCCCGTTTTTA--GACCGAGACTCCATCCGTAAAAATGCATAC 61937 ||||| | |||||||||||| ||||| | |||| ||| | | |||||||| Sbjct 11414 GTACGCAAATAGTACATTCCAGTTTTGATGGACCATTTTCCCAAGCAAAGAAATGCATTG 11355 Query 61938 TCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 61997 || | ||| | ||| | ||||| || ||||| | ||| | ||||||||||||||| | Sbjct 11354 AAGTAATTTTTGCATAGGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGATCAA 11295 Query 61998 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAG 62057 | || | | | |||| |||||| || || || ||||||||||||||||| || Sbjct 11294 TAAAAGGAGCTCGGTCTATAGCCATATTGATGATTTCACGTTGTGGAATTTCCCAAACAG 11235 Query 62058 TTTTATA 62064 |||| || Sbjct 11234 TTTTGTA 11228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633604674620000