Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2352 96.9 3e-15 seq2860 93.3 4e-14 >seq2352 Length=49960 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| |||||||||||||| || ||||||| | ||||| ||| | || Sbjct 38029 AATGCAAATTTTTGTTAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTAGAGGCCTC 37970 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || |||| || |||| ||| |||||||| |||||||| || |||| Sbjct 37969 GGACACGATTGAAAACGTGAAGGCCAAAATTCA-GGACAAAGAGGGGATTCCGCCAGACC 37911 Query 25117 AACAGCGGATTATTT 25131 | ||||| || ||| Sbjct 37910 AGCAGCGTCTTGTTT 37896 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/127 (76%), Gaps = 6/127 (5%) Strand=Plus/Minus Query 25000 TGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTG 25059 |||| || ||||| || |||||||| || || ||||||| | ||||| ||| | |||| Sbjct 37755 TGCAGATCTTTGTGAAAACTTTGACTGGAAAGACCATCACTCTTGAAGTTGAGGCCTCTG 37696 Query 25060 ACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||||| ||| | || |||| |||| ||| ||||| ||||| ||||| || || | Sbjct 37695 ACACTATTGAG--AATGTCAAAGCCAAAATTCA-AGACAAGGAAGGCATTCCGCCAGATC 37639 Query 25117 AACAGCG 25123 | ||||| Sbjct 37638 AGCAGCG 37632 >seq2860 Length=84313 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/130 (77%), Gaps = 8/130 (6%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| |||| || || | ||||| ||||||| ||| | || Sbjct 77439 AATGCAAATCTTTGTGAAAACTCTGACAGGGAAGACTATCACCCTCGAAGTTGAGGCATC 77380 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||||||||| |||| |||| |||| ||| ||||| ||||| ||||| || | Sbjct 77379 TGACACTATCGAAAATGTCA---AAGCCAAAATTCA-GGACAAGGAAGGTATTCCGCCAG 77324 Query 25114 ACCAACAGCG 25123 | |||||||| Sbjct 77323 ATCAACAGCG 77314 Score = 89.7 bits (98), Expect = 4e-13 Identities = 99/130 (76%), Gaps = 8/130 (6%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||||||||| ||||| || || ||||||| | |||||||| | || Sbjct 77708 AATGCAGATTTTTGTAAAGACATTGACGGGAAAGACCATCACCCTTGAAGTGGAAGCATC 77649 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||||| || |||| |||| || ||| |||||||||||||| ||||||| Sbjct 77648 AGACACTATTGAAAACGTCA---AAGC-CAAGATCCAGGACAAAGAAGGGATCCCACCTG 77593 Query 25114 ACCAACAGCG 25123 | || ||||| Sbjct 77592 ATCAGCAGCG 77583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433309779911750