Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1894 113 5e-20 >seq1894 Length=37626 Score = 113 bits (124), Expect = 5e-20 Identities = 274/420 (65%), Gaps = 39/420 (9%) Strand=Plus/Minus Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147 ||| || ||||| || ||| | |||||| || || || || || ||||| || ||| Sbjct 18183 TAAACAAGCAAAATCCCGATGAAGACCTTCATCACGAGAAATTAATTCATTACTTTGTGT 18124 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 || || || | || || |||||||| | |||||| |||| ||||||||| ||||| || Sbjct 18123 CAATCCAGGCATAAGACCACGTTTCTTCAACCAAAAAATTGCAGCAAAACTTCCAGAGAA 18064 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267 |||||| ||||| || | |||||||| | || |||||| |||| || ||||| Sbjct 18063 AAATATTCCTTCAACTGAAGCAAATGCAATAAGACGTTCTCCAAATGAAGCTTCTTTACT 18004 Query 93268 GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACA-----------AGGTAGT 93316 | |||| | ||||||||| || |||||||| ||| | | ||| Sbjct 18003 GGCAGTCCAACGAAGAGCCCAATCAGCCTTTTTCTTGATAAAGTCAAATTCAAATATAGC 17944 Query 93317 GTT------TC-------GATAGCG-------TTAAATAGGTAA--------TCTCGCTC 93348 ||| || || | | || |||| ||| | || || Sbjct 17943 GTTGAACAATCTTGCACTGAAAAAGAAAATTATTTAATAATTAAAAAAAGAGTACCGTTC 17884 Query 93349 GTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTC 93408 |||||| || || ||||| ||||| ||||||||||| ||||| | |||||| Sbjct 17883 AGTTGAATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTCTC 17824 Query 93409 CATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAA 93468 || || ||||| || || || ||||| | |||||| | || |||||||| |||| ||| Sbjct 17823 AATGGCTATTTGAAAGCCATAAAAACAACGAGCTTCTGGTATTTGCACTTCCTGAGCAAA 17764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556836785378000