Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3097 116 3e-21 seq2352 100 2e-16 seq2860 95.1 1e-14 >seq3097 Length=162332 Score = 116 bits (128), Expect = 3e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| ||||||||||| ||||||||||| |||||| | || |||||||| ||| | Sbjct 137137 AAATATGCAGATTTTTGTTAAGACTTTAACCGGCAAAACGATTACGCTTGAAGTTGAAGC 137078 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || ||| | || || |||| |||||||||||||||||||||||||| || || Sbjct 137077 TTCTGACACCATTGAAAATGTCAAGGCTAAAATTCAAGACAAGGAGGGTATTCCGCCAGA 137018 Query 22335 TCAACAACG 22343 ||||| || Sbjct 137017 CCAACAGCG 137009 >seq2352 Length=49960 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| ||| | || || || || |||||||||||||||| || | Sbjct 38297 ATGCAAATTTTTGTTAAGACTCTCACGGGAAAGACTATCACTCTTGAAGTGGAGGCCTCG 38238 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || || || ||||| ||||| ||||||||||||||| Sbjct 38237 GACACTATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAGGGCATTCCACCCGATCAA 38178 Query 22339 CAACGTCT 22346 |||||||| Sbjct 38177 CAACGTCT 38170 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || ||||| || || || || || ||||||||||||| ||| || Sbjct 38570 AATATGCAGATCTTCGTGAAAACGTTGACTGGAAAGACTATCACTCTTGAAGTTGAAGCC 38511 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || |||| ||||||||||||||||||||||| || || || Sbjct 38510 TCTGATACCATTGAAAATGTCAAGGCTAAAATTCAAGACAAGGAGGGTATCCCGCCGGAC 38451 Query 22336 CAACAACG 22343 || || || Sbjct 38450 CAGCAGCG 38443 Score = 89.7 bits (98), Expect = 4e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 |||| || ||||| |||||||| || || || || ||||||||||||| || || | | Sbjct 37755 TGCAGATCTTTGTGAAAACTTTGACTGGAAAGACCATCACTCTTGAAGTTGAGGCCTCTG 37696 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | || | || || ||||| ||||||||||||||||| || ||||| || ||||| | Sbjct 37695 ACACTATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAAGGCATTCCGCCAGATCAGC 37636 Query 22340 AACG 22343 | || Sbjct 37635 AGCG 37632 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| ||||| ||||| || || ||||||||||||| || || | Sbjct 38028 ATGCAAATTTTTGTTAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTAGAGGCCTCG 37969 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || |||||||| ||||| ||||| ||||| || || || Sbjct 37968 GACACGATTGAAAACGTGAAGGCCAAAATTCAGGACAAAGAGGGGATTCCGCCAGACCAG 37909 Query 22339 CAACGTCTT 22347 || |||||| Sbjct 37908 CAGCGTCTT 37900 >seq2860 Length=84313 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| ||||| ||||| | || || || || |||| || ||||||||| | | Sbjct 77980 GATGCAAATCTTTGTGAAAACGCTTACTGGAAAGACCATCACCCTCGAAGTGGAAGCTTC 77921 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||||| | || || ||||| ||||||||||||||| ||||| || || || ||||| Sbjct 77920 CGATACGATCGAGAATGTCAAAGCAAAAATTCAAGACAAAGAGGGGATCCCTCCGGATCA 77861 Query 22338 ACAACGT 22344 || ||| Sbjct 77860 GCAGCGT 77854 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || ||| | ||||| || ||| |||||||||||||||| | Sbjct 78529 AATATGCAGATCTTCGTAAAGACTCTTACCGGAAAGACGATCACTCTTGAAGTGGAGGCT 78470 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || |||||||||||||||||| || ||||| || ||| Sbjct 78469 TCTGATACTATCGAAAATGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCAGAT 78410 Query 22336 CAACAACG 22343 || || || Sbjct 78409 CAGCAGCG 78402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419710351749250