Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2860 120 6e-22 seq2855 113 8e-20 seq2352 98.7 2e-15 seq3424 95.1 2e-14 seq3097 89.7 9e-13 seq1295 89.7 9e-13 >seq2860 Length=84313 Score = 120 bits (132), Expect = 6e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 68336 TCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGAT 68395 || ||| || || |||||||| ||||| |||||||||||||| ||||| ||| ||| || Sbjct 78126 TCGTTGCTGATCAGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTAACGTTCTCAAT 78185 Query 68396 GGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455 |||||| | || || ||||| | ||||||||||| || || || ||||||||||| || Sbjct 78186 GGTGTCGGAAGACTCAACTTCGAGCGTGATGGTTTTCCCAGTAAGCGTCTTGACGAAAAT 78245 Query 68456 CTGCAT 68461 |||||| Sbjct 78246 CTGCAT 78251 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || || || || ||||||||||||||||||||||| |||||||| || ||||| || Sbjct 78405 TGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATAGTA 78464 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | | || ||||| | ||||| || ||||| || || ||||| ||||| |||||| Sbjct 78465 TCAGAAGCCTCCACTTCAAGAGTGATCGTCTTTCCGGTAAGAGTCTTTACGAAGATCTGC 78524 Query 68460 AT 68461 || Sbjct 78525 AT 78526 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||| ||||| || ||||| ||||| |||||||| || || ||||||||||| ||||| || Sbjct 77159 TTAGTTTCCACCACGAAGACGCAAGACCAAGTGAAGAGTAGACTCTTTTTGAATGTTGTA 77218 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATAT 68332 || | ||| || | ||||| || | |||||| || ||||| || Sbjct 77219 GTCAGCGAGCGTACGACCATCCTCGAGCTGCTTTCCAGCGAAGAT 77263 >seq2855 Length=35860 Score = 113 bits (124), Expect = 8e-20 Identities = 122/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || ||||||||||||||||| ||||| | ||| || || || || || || ||| Sbjct 31860 CCATCCTCCAACTGCTTCCCGGCGAAGATGAGGCGTTGCTGCTCTGGGGGGATCCCCTCC 31919 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTG-CTGATTCTACTTCCAAGGT 68422 || || || ||||| |||||||| |||||||||||| | ||| || || |||| || Sbjct 31920 TTCTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGACTG-CTCCACATCCAGAGT 31978 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || || || ||||| || ||||| || | ||||| Sbjct 31979 GATCGTCTTCCCGGTGAGCGTTTTGACAAAGACTTGCAT 32017 >seq2352 Length=49960 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 68339 TTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGT 68398 |||||| |||||||||||||| || ||||| || ||||| ||||| || ||| || || Sbjct 38175 TTGTTGATCGGGTGGAATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATAGT 38234 Query 68399 GTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTG 68458 ||| | | || ||||| | ||||| || ||||||||||| ||||| || || || || Sbjct 38235 GTCCGAGGCCTCCACTTCAAGAGTGATAGTCTTTCCCGTGAGAGTCTTAACAAAAATTTG 38294 Query 68459 CATT 68462 |||| Sbjct 38295 CATT 38298 Score = 84.2 bits (92), Expect = 4e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || || || || ||||||||||||||||||||||| || || ||||| ||| || ||| Sbjct 37635 TGCTGATCTGGCGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATAGTG 37694 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | | || ||||| | |||||||| ||||| || | || || || || |||||| Sbjct 37695 TCAGAGGCCTCAACTTCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTCACAAAGATCTGC 37754 Query 68460 A 68460 | Sbjct 37755 A 37755 >seq3424 Length=85059 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 |||||||||||||||||||||| ||||| | || ||||||| || || |||| ||||||| Sbjct 39504 AGCGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCG 39445 Query 84513 AGCCCCACATCGGGC 84527 |||||| |||||||| Sbjct 39444 AGCCCCGCATCGGGC 39430 >seq3097 Length=162332 Score = 89.7 bits (98), Expect = 9e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 |||||||| || ||||| || |||||||||||||| || |||||||| || |||||| Sbjct 137012 TGTTGGTCTGGCGGAATACCCTCCTTGTCTTGAATTTTAGCCTTGACATTTTCAATGGTG 137071 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | | ||| ||||| | || || ||||| || || | ||||| || || |||||| Sbjct 137072 TCAGAAGCTTCAACTTCAAGCGTAATCGTTTTGCCGGTTAAAGTCTTAACAAAAATCTGC 137131 Query 68460 AT 68461 || Sbjct 137132 AT 137133 >seq1295 Length=20717 Score = 89.7 bits (98), Expect = 9e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || || |||| |||||||||| Sbjct 1834 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 1775 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 1774 CCCGCATCGGGC 1763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921582655034000