Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2860 105 2e-17 seq1807 91.5 3e-13 seq2855 84.2 5e-11 seq2352 84.2 5e-11 >seq2860 Length=84313 Score = 105 bits (116), Expect = 2e-17 Identities = 178/270 (66%), Gaps = 41/270 (15%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | | ||||| |||| ||| |||||||||||| ||||||||||| Sbjct 77439 TCCACCGCGGAGACGCAAAACGAGGTGAAGAGTGGATTCTTTTTGGATGTTATAGTCGGC 77498 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGAT--------------------- 288344 || || || || ||||| | ||||| || |||||||| Sbjct 77499 AAGGGTTCGACCATCTTCAAGCTGTTTACCAGCGAAGATCTTAAAGTTGAAATATCTCAA 77558 Query 288345 --------------------CAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 ||| ||||| ||| | |||||| |||||||| |||||| Sbjct 77559 TGACAAAGTAATCAACAAACCAGGCGCTGCTGATCAGGTGGGATCCCTTCTTTGTCCTGG 77618 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || || ||||| |||||||| |||| || | ||| ||||| || ||||| ||||| Sbjct 77619 ATCTTGGCTTTGACGTTTTCAATAGTGTCTGATGCTTCCACTTCAAGGGTGATGGTCTTT 77678 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || |||| ||||| || || ||||||||| Sbjct 77679 CCCGTCAATGTCTTTACAAAAATCTGCATT 77708 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| ||||||||||| || || || || || || ||||| || || | ||| || || Sbjct 78141 TGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTAACGTTCTCAATGGTGTCGGAAGACTC 78200 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||||||||| || ||||| || || ||||||||||| |||||||| Sbjct 78201 AACTTCGAGCGTGATGGTTTTCCCAGTAAGCGTCTTGACGAAAATCTGCAT 78251 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| || || || ||||| || ||||| ||||| |||| ||| | || Sbjct 78417 GGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATAGTATCAGAAGCCTCC 78476 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||||||||| ||||| |||||||| ||||| |||||||| Sbjct 78477 ACTTCAAGAGTGATCGTCTTTCCGGTAAGAGTCTTTACGAAGATCTGCAT 78526 >seq1807 Length=32432 Score = 91.5 bits (100), Expect = 3e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 288345 CAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTC 288404 || |||||||||| | ||||| || || ||||| || ||||| || || || ||||| Sbjct 21108 CAAACGCTGTTGATCAGGCGGGATGCCCTCCTTATCTTGAATTTTGGCCTTAACATTTTC 21049 Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 |||| ||| | || |||||||| || || || || ||||| ||||||||||| || Sbjct 21048 AATAGTATCAGAAGCCTCAACTTCGAGTGTAATAGTTTTTCCGGTGAGAGTCTTGACAAA 20989 Query 288465 TATCTGCATTATGTTATTCTAATATTTTT 288493 ||||||| ||| | || || | |||||| Sbjct 20988 AATCTGCA-TATTTAATGCTTA-ATTTTT 20962 >seq2855 Length=35860 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/188 (70%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 || ||||| ||||| || | ||| || || || || || || || || |||||||| || Sbjct 31833 TGAATATTGTAGTCAGCCAACGTTCGACCATCCTCCAACTGCTTCCCGGCGAAGATGAGG 31892 Query 288349 CGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || || || |||||| || || || || |||||||| || || || || || || Sbjct 31893 CGTTGCTGC---TCTGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCG 31949 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || | || | || || || || ||||||||||||||||| || || ||||| || Sbjct 31950 ATGGTGTCCGACTGCTCCACATCCAGAGTGATCGTCTTCCCGGTGAGCGTTTTGACAAAG 32009 Query 288466 ATCTGCAT 288473 | ||||| Sbjct 32010 ACTTGCAT 32017 >seq2352 Length=49960 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || ||||| ||||| ||||| || ||||||||||| || | || | ||| Sbjct 37919 GGAATCCCCTCTTTGTCCTGAATTTTGGCCTTCACGTTTTCAATCGTGTCCGAGGCCTCT 37978 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || ||||| ||||| ||||||| |||||| || || || |||||| Sbjct 37979 ACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTAACAAAAATTTGCATT 38029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179602255589100