Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2352 86.0 6e-12 seq2860 82.4 8e-11 >seq2352 Length=49960 Score = 86.0 bits (94), Expect = 6e-12 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 64311 AAATNAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAA 64370 ||| || ||||||||||| || ||||| || ||||| || || ||||| ||| || Sbjct 37896 AAACAAGACGCTGCTGGTCTGGCGGAATCCCCTCTTTGTCCTGAATTTTGGCCTTCACGT 37955 Query 64371 CCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTA 64430 || | || || ||| || ||||| | ||| | |||||| ||||||||||| || | Sbjct 37956 TTTCAATCGTGTCCGAGGCCTCTACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTAA 38015 Query 64431 CGAAAATTTGCATT 64444 | |||||||||||| Sbjct 38016 CAAAAATTTGCATT 38029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCAC 64377 |||||||| || || ||||| ||||| || ||||| ||||| ||||| ||| ||| | Sbjct 37632 CGCTGCTGATCTGGCGGAATGCCTTCCTTGTCTTGAATTTTG-GCTTTGACATTCTCAAT 37690 Query 64378 TGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAAT 64437 || ||| ||| || ||||| | ||| | |||||| || ||||||||||| || || || Sbjct 37691 AGTGTCAGAGGCCTCAACTTCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTCACAAAGAT 37750 Query 64438 TTGCA 64442 |||| Sbjct 37751 CTGCA 37755 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| |||||||| || |||||||||||||| || | ||||| |||| Sbjct 38044 AAGTACAAGATGAAGTGTCGATTCCTTCTGAATGTTGTAATCCGCAAGAGTGCGGCCGTC 38103 Query 64291 TTCAAGCTGCTTGCCGGCATAAAT 64314 |||||||||||| || ||| |||| Sbjct 38104 TTCAAGCTGCTTACCAGCAAAAAT 38127 >seq2860 Length=84313 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||||| | || ||||| | |||||| ||||||||||| || || || ||| Sbjct 77709 CCTCCACGCAATCGCAAGACAAGATGGAGCGTCGACTCTTTTTGAATATTATAGTCCGCG 77768 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAAT 64314 | |||||| ||||||| || |||||||| ||| |||| Sbjct 77769 AGGGTGCGACCGTCTTCGAGTTGCTTGCCAGCAAAAAT 77806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499623252818000