Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2855 100 3e-16 seq2860 87.8 2e-12 >seq2855 Length=35860 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||||||||| || ||| ||| ||| ||| || | ||| || || ||| |||| | Sbjct 31833 TGAATATTGTAGTCAGCCAACGTTCGACCATCCTCCAACTGCTTCCCGGCGAAGATGAGG 31892 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 || ||||| || || || || |||||||| ||| ||| || ||||| | |||| | Sbjct 31893 CGTTGCTGCTCTGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 31952 Query 127049 GTGTCCGTACT-CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| ||| ||| || || | || | ||| || ||||| || ||||| ||||| | Sbjct 31953 GTGTCCG-ACTGCTCCACATCCAGAGTGATCGTCTTCCCGGTGAGCGTTTTGACAAAGAC 32011 Query 127108 CTGCATGGC 127116 |||||||| Sbjct 32012 TTGCATGGC 32020 >seq2860 Length=84313 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 126985 CAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTT 127043 ||||||||||||||| ||||| ||||| ||||||| | ||| ||| || ||| | | || Sbjct 78398 CAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGT-CTTGAATTTTTGCCTTCACATTTT 78456 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| || || | | ||| ||||| | || | ||| || ||||| ||||| ||||| | Sbjct 78457 CGATAGTATCAGAAGCCTCCACTTCAAGAGTGATCGTCTTTCCGGTAAGAGTCTTTACGA 78516 Query 127104 AAATCTGCAT 127113 | |||||||| Sbjct 78517 AGATCTGCAT 78526 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | ||||| ||||| || | ||||||||||||||||| ||||| || | Sbjct 77165 TCCACCACGAAGACGCAAGACCAAGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGC 77224 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 | ||| ||| ||| || ||||| ||||||||| ||||| Sbjct 77225 GAGCGTACGACCATCCTCGAGCTGCTTTCCAGCGAAGATC 77264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475480294028000