Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3097 102 7e-17 seq2860 96.9 3e-15 seq1807 89.7 5e-13 seq2352 82.4 7e-11 >seq3097 Length=162332 Score = 102 bits (112), Expect = 7e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 ||| || || ||||| |||||||| || || || ||||||||||| |||| ||| Sbjct 137005 CAAGCGCTGTTGGTCTGGCGGAATACCCTCCTTGTCTTGAATTTTAGCCTTGACATTTTC 137064 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | |||||| |||| || ||||| || |||| |||||||||||||| ||| || ||||| Sbjct 137065 AATGGTGTCAGAAGCTTCAACTTCAAGCGTAATCGTTTTGCCGGTTAAAGTCTTAACAAA 137124 Query 45332 AATTTGCAT 45340 ||| ||||| Sbjct 137125 AATCTGCAT 137133 >seq2860 Length=84313 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-T 45270 |||||||||||| || || ||||| |||||||| |||||||| || || | || | | Sbjct 78123 CAATCGTTGCTGATCAGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTAA-CGTTCT 78181 Query 45271 CTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330 | | ||||||||||||||| |||||||| || | ||||| || || || || || || | Sbjct 78182 CAATGGTGTCGGAAGACTCAACTTCGAGCGTGATGGTTTTCCCAGTAAGCGTCTTGACGA 78241 Query 45331 AAATTTGCAT 45340 |||| ||||| Sbjct 78242 AAATCTGCAT 78251 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 |||||| ||||| || || ||||||||||| || |||||||||||| || | ||| Sbjct 78398 CAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTC 78457 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | || || |||| ||| ||||| ||||| | ||| || ||||| ||||| ||||| || Sbjct 78458 GATAGTATCAGAAGCCTCCACTTCAAGAGTGATCGTCTTTCCGGTAAGAGTCTTTACGAA 78517 Query 45332 AATTTGCAT 45340 || ||||| Sbjct 78518 GATCTGCAT 78526 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 ||| || ||||| ||||| || || || ||||| |||||||||||| ||||| || Sbjct 77851 CAAACGCTGCTGATCCGGAGGGATCCCCTCTTTGTCTTGAATTTTTGCTTTGACATTCTC 77910 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | || ||||||| || |||||||| || | || || || || || ||||| ||||| Sbjct 77911 GATCGTATCGGAAGCTTCCACTTCGAGGGTGATGGTCTTTCCAGTAAGCGTTTTCACAAA 77970 Query 45332 AATTTGCATC 45341 ||||||||| Sbjct 77971 GATTTGCATC 77980 >seq1807 Length=32432 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 ||| || || || || ||||| ||||| || |||||||||||||| || | ||| Sbjct 21108 CAAACGCTGTTGATCAGGCGGGATGCCCTCCTTATCTTGAATTTTGGCCTTAACATTTTC 21049 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | || || |||| ||| |||||||| |||| ||||| ||||| ||||| || ||||| Sbjct 21048 AATAGTATCAGAAGCCTCAACTTCGAGTGTAATAGTTTTTCCGGTGAGAGTCTTGACAAA 20989 Query 45332 AATTTGCAT 45340 ||| ||||| Sbjct 20988 AATCTGCAT 20980 >seq2352 Length=49960 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 ||| || ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 37628 CAAGCGCTGCTGATCTGGCGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTC 37687 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||||| || | ||| ||||| ||||| | || || || || | |||||| ||||| Sbjct 37688 AATAGTGTCAGAGGCCTCAACTTCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTCACAAA 37747 Query 45332 AATTTGCA 45339 || |||| Sbjct 37748 GATCTGCA 37755 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 || |||||||| |||||||| || ||||| || |||||||| || | ||| | Sbjct 37904 CGCTGCTGGTCTGGCGGAATCCCCTCTTTGTCCTGAATTTTGGCCTTCACGTTTTCAATC 37963 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 ||||| || | ||| ||||| ||||| | || || ||||| | ||| || ||||||||| Sbjct 37964 GTGTCCGAGGCCTCTACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTAACAAAAATT 38023 Query 45336 TGCAT 45340 ||||| Sbjct 38024 TGCAT 38028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451983707362000