Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2172 205 4e-47 seq3420 163 1e-34 seq3337 129 2e-24 seq3332 109 2e-18 seq1807 100 1e-15 seq2611 95.1 5e-14 seq2352 95.1 5e-14 seq1983 95.1 5e-14 seq2860 91.5 6e-13 seq3097 87.8 7e-12 >seq2172 Length=48972 Score = 205 bits (226), Expect = 4e-47 Identities = 248/335 (74%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 451275 AAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTG 451334 ||| |||| ||||| | ||| ||| |||| ||||||| |||||| ||| |||||| Sbjct 14855 AAAGGAAACAAACATCTGAAGCTTATCTTGGACATCCAGTTCGTGATGCTGTAGTTACTG 14796 Query 451335 TTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTG 451394 |||| || ||||| ||||||| || || ||||||||||||||||| || || ||||||| Sbjct 14795 TTCCTGCATATTTTAATGATGGGCAGCGTCAAGCAACTAAAGATGCGGGTCAGATTGCTG 14736 Query 451395 GTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAG 451454 || | |||||| | ||||||||||||||||| || || |||||| | || |||||| | | Sbjct 14735 GTCTTAATGTTTTGCGAATTATTAATGAACCAACGGCTGCTGCTTTGGCTTATGGA-TTG 14677 Query 451455 GAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTC 451514 || || ||| | | || || | |||||| | | ||||| ||||||| || ||| Sbjct 14676 GATAAGAAAATG--AGAGGGGATCAGAATATTCTTATTTTTGACCTTGGTGGTGGTACTT 14619 Query 451515 ATGATACTTCTGTACTTTCAATTGAAGATGG---GGTATTTGAAGTAAAGGCAACCAATG 451571 ||| |||||| | |||||| || || | |||||||| || |||| || Sbjct 14618 TCGATGTTTCTGTTTTGGCAATTGCTGAGGGTTCTTTGTTTGAAGTTAAATCAACAGCTG 14559 Query 451572 GTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 |||| |||||| | ||||| || ||| |||||||| Sbjct 14558 GTGACACTCATTTGGGAGGAGAGGATTTTGATAAT 14524 >seq3420 Length=116350 Score = 163 bits (180), Expect = 1e-34 Identities = 195/264 (74%), Gaps = 3/264 (1%) Strand=Plus/Minus Query 451190 AAAGGAAA---GCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCT 451246 |||||||| ||| |||| ||| ||| || |||||||||||| |||||||| Sbjct 6924 AAAGGAAATAAGCCACATATAAAAGCAAACGTCAATGGTGAAACTAAACAATTTGCTCCA 6865 Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 ||||| || ||| | ||||||||| || ||||| |||| || ||| ||| | ||| Sbjct 6864 GAAGAGATCTCAGCAATGGTTCTTGGAAAGATGAAGGAAATTGCCGAAGCCTATTTGGGT 6805 Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366 | ||||| |||| || | || |||||||| || || || ||||| ||||| ||| Sbjct 6804 CATGAAGTTAAGCATGCTGTTGTAACCGTTCCCGCCTACTTTAACGATGCTCAACGTCAA 6745 Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || || |||||||| ||| || ||||||| |||||| | || |||||||||||||| Sbjct 6744 GCTACCAAAGATGCTGGAACAATCTCTGGTTTGAATGTTGTGCGTATTATTAATGAACCG 6685 Query 451427 ACAGCAGCTGCTCTAGCATATGGA 451450 ||||| |||||| | || |||||| Sbjct 6684 ACAGCTGCTGCTATTGCTTATGGA 6661 Score = 84.2 bits (92), Expect = 9e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 452330 ACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGA 452389 |||| ||| |||| | || || |||||| |||| | || | || ||| | ||||| Sbjct 5243 ACCTTTGAAATTGACGTCAACGGAATTCTTCATGTCACAGCCGAAGACAAAGGAACTGGA 5184 Query 452390 AAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAA 452449 || | | |||||||| || || ||||| | |||||||||||| |||||||||||| Sbjct 5183 AATAAAAATAAAATTACCATCACAAATGACCACAACCGTTTATCTCCTGAAGATATTGAA 5124 Query 452450 AAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGAACAAGTTA 452498 | |||||| |||| || || || || || || ||| ||| |||| Sbjct 5123 AGAATGGTTAATGATGCTGAGAAGTTTGCTGAAGAGGATAAACGTGTTA 5075 >seq3337 Length=92621 Score = 129 bits (142), Expect = 2e-24 Identities = 211/302 (70%), Gaps = 3/302 (1%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||| |||||||||||||| || || || || ||||| ||| ||||| || || || Sbjct 80041 GTTAAGGATGCAGTAATTACGGTGCCTGCCTACTTCAACGATAGCCAACGACAGGCTACC 80100 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || ||||| ||| || |||| | |||||| | ||||| || || ||||| || || Sbjct 80101 AAGGATGCTGGAACAATCTCTGGGCTTAATGTTTTGCGAATCATCAACGAACCGACCGCC 80160 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 |||||| | || ||||| || ||| || || | || ||| || | | || Sbjct 80161 GCTGCTATTGCTTATGG-CTTGGATAA--GAAGGGTCAAGGAGAGCGGAACGTCCTGATA 80217 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 |||||||| || || || || ||| |||| | || | ||||||||||| | ||| Sbjct 80218 TTTGATTTGGGCGGCGGGACCTTTGACGTTTCTATTCTGACTATTGAAGATGGAATTTTT 80277 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATT 451612 || || || |||| ||| ||||||||||| || ||||||||| |||| ||| ||| Sbjct 80278 GAGGTCAAATCAACTGCTGGAGATACTCATCTTGGTGGTGAAGATTTTGACAATCGAATG 80337 Query 451613 GT 451614 || Sbjct 80338 GT 80339 Score = 93.3 bits (102), Expect = 2e-13 Identities = 115/156 (74%), Gaps = 10/156 (6%) Strand=Plus/Plus Query 451890 AAATTGATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGT 451949 ||||| |||| ||||| ||||| || || || || |||||||| ||| ||||| | | | Sbjct 80700 AAATTCATGATATTGTTCTTGTTGGTGGATCGACTCGAATTCCAAAAGTTCAAAAACTTT 80759 Query 451950 TGTC----TTCTTATTTTGGA-GGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGC 452004 |||| ||||| | | ||| ||| ||| ||| || | ||||| || ||||| Sbjct 80760 TGTCCGACTTCTTCTCTGGGAAGGAGCTCAA-----TAAAAGTATCAATCCAGACGAAGC 80814 Query 452005 TGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCT 452040 |||||||||||| ||||| ||||| || ||||| || Sbjct 80815 TGTTGCATATGGAGCTGCTGTTCAGGCTGCTATCCT 80850 Score = 87.8 bits (96), Expect = 7e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 452314 TCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGT 452373 ||||||||||||| |||||| || |||| ||||| || ||||||||||| || Sbjct 81255 TCCTCAAATTGAAGTTACCTTCGACATTGACGCAAACGGCATTCTTAATGTCTCAGCTCA 81314 Query 452374 TGAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTAT 452432 || ||||| |||| ||| ||||| || || |||||||| || || ||| |||| | | Sbjct 81315 AGACAAATCGACTGG-AAAGCAGAATAAGATCACAATTACGAACGACAAAGGCCGTCTTT 81373 Query 452433 CTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAAT 452474 | || || || || || ||||| | || |||||||||| Sbjct 81374 CCAAGGATGAGATCGAGCGCATGGTCCAGGAGGCAGAAAAAT 81415 >seq3332 Length=299365 Score = 109 bits (120), Expect = 2e-18 Identities = 136/185 (74%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 451267 TCTTACT-AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAG 451325 ||||| | |||||||| ||||| || ||| | ||| |||| | | | | |||||| Sbjct 216626 TCTTAATGAAAATGAAGGAAACTGCTGAAAACTATCTTGGCACAAGCGCTCCAAATGCAG 216567 Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGAC 451385 | || || ||||| || || ||||| ||| | ||||| ||||| ||||||||||| || | Sbjct 216566 TCATCACCGTTCCTGCCTACTTCAACGATTCTCAACGTCAAGCTACTAAAGATGCTGGTC 216507 Query 451386 ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCAT 451445 | ||||||||| || ||| | || || | |||||||| || || || || || || | Sbjct 216506 AAATTGCTGGTCTACGAGTTTTGCGTGTTGTCAATGAACCCACTGCTGCAGCACTTGCTT 216447 Query 451446 ATGGA 451450 ||||| Sbjct 216446 ATGGA 216442 >seq1807 Length=32432 Score = 100 bits (110), Expect = 1e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || || || || ||||||||||| || || ||||| | ||| Sbjct 20980 ATGCAGATTTTTGTCAAGACTCTCACCGGAAAAACTATTACACTCGAAGTTGAGGCTTCT 21039 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | |||| ||||||||||||||||| || || || ||||||||| Sbjct 21040 GATACTATTGAAAATGTTAAGGCCAAAATTCAAGATAAGGAGGGCATCCCGCCTGATCAA 21099 Query 391170 CAACGTTT 391177 || ||||| Sbjct 21100 CAGCGTTT 21107 >seq2611 Length=17818 Score = 95.1 bits (104), Expect = 5e-14 Identities = 148/209 (71%), Gaps = 7/209 (3%) Strand=Plus/Minus Query 364639 AAAAAGATCAAGTAAAAGTAGCTCAATTAGCAGGTTTTGTATCTGACCGGGTAGCTTATC 364698 ||||||| ||| |||||||| ||||| || ||| ||| ||| | || |||| Sbjct 10381 AAAAAGA---AGTCAAAGTAGCACAATTGGCTGGTGCTGTTGGTGAAATGTCGGCATATC 10325 Query 364699 ATCACGGTGAGGCAAGTTTAATGGGAGCAATAATTGGAAT--GGCACAAAATTTTGTTGG 364756 ||||||| || | |||||| | |||| || |||| ||| || ||||||||||| Sbjct 10324 ATCACGGAGAACAATCATTAATGTCAACAATTAT--GAATCTGGCTCATAATTTTGTTGG 10267 Query 364757 AAGTAATAATGTAAATTTACTAGAACCAAAAGGACAATTTGGAAGTCGAGTAATGGGAGG 364816 ||||||| | ||| || || ||||| || |||||||| | ||| || ||||| Sbjct 10266 CTCTAATAATATCAATCTATTAATGCCAAATGGTCAATTTGGTACTCGTTTACAAGGAGG 10207 Query 364817 TAAAGATTCTGCCAGCCCACGTTATATTT 364845 ||||||||||| || |||||||||| Sbjct 10206 GAAAGATTCTGCTTCGCCTCGTTATATTT 10178 >seq2352 Length=49960 Score = 95.1 bits (104), Expect = 5e-14 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 391041 TATATTATAAT--GAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATG 391098 |||||| |||| | | || ||||| ||||| ||||||| || ||||| |||||||| | Sbjct 38578 TATATTCTAATATGCAGATCTTCGTGAAAACGTTGACTGGAAAGACTATCACTCTTGAAG 38519 Query 391099 TTGAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTC 391158 ||||| | ||||||| ||||||| | | || ||||||||||| ||||| || || | Sbjct 38518 TTGAAGCCTCTGATACCATTGAAAATGTCAAGGCTAAAATTCAAGACAAGGAGGGTATCC 38459 Query 391159 CTCCTGATCAACAACGTTT 391177 | || || || || || || Sbjct 38458 CGCCGGACCAGCAGCGCTT 38440 >seq1983 Length=15124 Score = 95.1 bits (104), Expect = 5e-14 Identities = 128/177 (72%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 501347 TATAATGACAGCACAGTTTGAAACTGGTTCACCCtatatgttatataaagataatattaa 501406 |||||| || ||||| | ||||||||| || |||||| | || |||||| | ||| Sbjct 10061 TATAATCACTGCACAAATAGAAACTGGTATTCCATATATGGTCTACAAAGATGCTTGTAA 10120 Query 501407 taaaaaatcaaaccagaaaaatataggaataatTAGAAGTTCAAATTTATGTGCTGAAAT 501466 || ||||||||||| ||||| | |||| |||| | | |||||| | || ||||||| Sbjct 10121 TAGCAAATCAAACCAACAAAATTTGGGAACGATTAAATGCTCAAATCTTTGCACTGAAAT 10180 Query 501467 TGTAGAATATTCAGATTCTACTGAAACAGCTGCT---TGTAATTTAGCTTCAATTGC 501520 | | |||||| || || |||| || | || || ||||| ||||||||||| Sbjct 10181 TATTGAATATACA---TCACCTGAGGAAGTTTCTGTCTGCAATTTGGCTTCAATTGC 10234 >seq2860 Length=84313 Score = 91.5 bits (100), Expect = 6e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || ||||| ||||| || || || || ||||| || || Sbjct 78251 ATGCAGATTTTCGTCAAGACGCTTACTGGGAAAACCATCACGCTCGAAGTTGAGTCTTCC 78192 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| |||| || |||||||| || ||||||||||| |||||||| Sbjct 78191 GACACCATTGAGAACGTTAAGGCCAAGATTCAAGACAAAGAAGGAATTCCACCTGATCAG 78132 Query 391170 CAACGTTTAATTTTC 391184 ||||| || ||||| Sbjct 78131 CAACGATTGGTTTTC 78117 >seq3097 Length=162332 Score = 87.8 bits (96), Expect = 7e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| ||||| || | || || ||||| ||||| ||||| |||||| | ||| Sbjct 137133 ATGCAGATTTTTGTTAAGACTTTAACCGGCAAAACGATTACGCTTGAAGTTGAAGCTTCT 137074 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||||| | | || ||||||||||| ||||| || ||||| || || ||| Sbjct 137073 GACACCATTGAAAATGTCAAGGCTAAAATTCAAGACAAGGAGGGTATTCCGCCAGACCAA 137014 Query 391170 CAACGTTT 391177 || || || Sbjct 137013 CAGCGCTT 137006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975631067072600